RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 TEX101Q9BY14 249 aa15.3■□□□□ 0.04
CLSTN3-216ENST00000545663 GTPBP4Q9BZE4 634 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-216ENST00000545663 BRD8Q9H0E9 1235 aa15.3■□□□□ 0.04
CLSTN3-216ENST00000545663 LATS2Q9NRM7 1088 aa15.3■□□□□ 0.04
CLSTN3-216ENST00000545663 LHX3Q9UBR4 397 aa15.3■□□□□ 0.04
CLSTN3-216ENST00000545663 CNTN6Q9UQ52 1028 aa15.3■□□□□ 0.04
CLSTN3-216ENST00000545663 B3GNT3Q9Y2A9 372 aa15.3■□□□□ 0.04
CLSTN3-216ENST00000545663 PLEKP08567 350 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 ELFN1P0C7U0 828 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 CMA1P23946 247 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 SLC6A3Q01959 620 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 HHEXQ03014 270 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 CYTH1Q15438 398 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 RWDD4Q6NW29 188 aaKnown RBP15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 SLC26A9Q7LBE3 791 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 FJX1Q86VR8 437 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 NLRP14Q86W24 1093 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 ST6GALNAC3Q8NDV1 305 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 HCAR2Q8TDS4 363 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 NT5C3BQ969T7 300 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 C9orf72Q96LT7 481 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 PHPT1Q9NRX4 125 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 GPR83Q9NYM4 423 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 USP25Q9UHP3 1055 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 TMEM98Q9Y2Y6 226 aa15.29■□□□□ 0.04
CLSTN3-216ENST00000545663 FAM170AA1A519 330 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 CFAP69A5D8W1 941 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 GOLGA6L3A6NEY3 463 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 MED7O43513 233 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 ANKRD34CP0C6C1 535 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 ETFBP38117 255 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 IL11RAQ14626 422 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 MEA1Q16626 185 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 RAB6CQ53S08 254 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 AFMIDQ63HM1 303 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 SYVN1Q86TM6 617 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 ZNF354CQ86Y25 554 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 HPS6Q86YV9 775 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 FNIP1Q8TF40 1166 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 SMAD5Q99717 465 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 GPR87Q9BY21 358 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 RAB6CQ9H0N0 254 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 MAGEH1Q9H213 219 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 PPARGC1AQ9UBK2 798 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 SLC17A4Q9Y2C5 497 aa15.28■□□□□ 0.04
CLSTN3-216ENST00000545663 FAM72CH0Y354 149 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 KIF1CO43896 1103 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 TMEM63AO94886 807 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 FGF5P12034 268 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 COX6B1P14854 86 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 ERCC5P28715 1186 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 GNA15P30679 374 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 GLRBP48167 497 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 CDK3Q00526 305 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 CFAP58Q5T655 872 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 FAM72AQ5TYM5 149 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 FAM72DQ6L9T8 149 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 BRAT1Q6PJG6 821 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 MARK2Q7KZI7 788 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 CDH24Q86UP0 819 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 KCNMB4Q86W47 210 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 FAM72BQ86X60 149 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 FAM131BQ86XD5 332 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 ADAMTS17Q8TE56 1095 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 SEC14L1Q92503 715 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 PGAP3Q96FM1 320 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 COQ10AQ96MF6 247 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 ILKAPQ9H0C8 392 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 NOL6Q9H6R4 1146 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 OGFRQ9NZT2 677 aa15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 ARMCX3Q9UH62 379 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 FARSAQ9Y285 508 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-216ENST00000545663 MDC1Q14676 2089 aaKnown RBP15.27■□□□□ 0.03
CLSTN3-216ENST00000545663 MN1Q10571 1320 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 SSU72P8A0A1W2PR75 194 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 RAMP2O60895 175 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 F9P00740 461 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 IVLP07476 585 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 LPOP22079 712 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 RPS15P62841 145 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 GCNT1Q02742 428 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 ART3Q13508 389 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 PEX6Q13608 980 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 ANO6Q4KMQ2 910 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 TRNP1Q6NT89 227 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 PWWP2BQ6NUJ5 590 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 PLXDC1Q8IUK5 500 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 C1orf131Q8NDD1 294 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 TGM7Q96PF1 710 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 OR2M4Q96R27 311 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 NEU3Q9UQ49 428 aa15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 PCYT1BQ9Y5K3 369 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-216ENST00000545663 PPP1R3GB7ZBB8 358 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 RASA4BC9J798 803 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 E2F3O00716 465 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 SLC16A3O15427 465 aaKnown RBP15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 RASA4O43374 803 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 C9P02748 559 aa15.25■□□□□ 0.03
CLSTN3-216ENST00000545663 MT-ND3P03897 115 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms