RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SEC22BO75396 215 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 LRCH4O75427 683 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 LTFP02788 710 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CATP04040 527 aaKnown RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 SFTPCP11686 197 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 PSMB9P28065 219 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CD52P31358 61 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 NDST2P52849 883 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 RPS7P62081 194 aaKnown RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 TCEAL5Q5H9L2 206 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 XKRXQ6PP77 449 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ADGRD1Q6QNK2 874 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 RFX8Q6ZV50 586 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 GPRIN3Q6ZVF9 776 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 TAS1R2Q8TE23 839 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 DCAKDQ8WVC6 231 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 BORCS6Q96GS4 357 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ACO2Q99798 780 aaKnown RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 RAB11FIP5Q9BXF6 653 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ATP13A3Q9H7F0 1226 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CCL16O15467 120 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 VAPBO95292 243 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 FESP07332 822 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 HNRNPA1P09651 372 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CCNCP24863 283 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 RPA3P35244 121 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 EIF2B2P49770 351 aaKnown RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 PKNOX1P55347 436 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 NME5P56597 212 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 FAAP100Q0VG06 881 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 MYBPC3Q14896 1274 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 SLC26A9Q7LBE3 791 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 SNX32Q86XE0 403 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 SAMD14Q8IZD0 417 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 C9orf43Q8TAL5 461 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CEP76Q8TAP6 659 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ACTL9Q8TC94 416 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 NIFKQ9BYG3 293 aaKnown RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 IRX2Q9BZI1 471 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 GPRC5CQ9NQ84 441 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 RBM22Q9NW64 420 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 COMMD9Q9P000 198 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 PEX16Q9Y5Y5 336 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 FAM92AA1XBS5 289 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 HDAC3O15379 428 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 KLRC4O43908 158 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 EDF1O60869 148 aaKnown RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 LRIG2O94898 1065 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ERCC1P07992 297 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 GABRR2P28476 465 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CCNFP41002 786 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 GJA8P48165 433 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ILF3Q12906 894 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 DPY19L1Q2PZI1 675 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 LRRC55Q6ZSA7 311 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 BEND5Q7L4P6 421 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ARMCX6Q7L4S7 300 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CLVS1Q8IUQ0 354 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-211ENST00000543710 TEX47Q8TBZ9 253 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ACER1Q8TDN7 264 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 SHC3Q92529 594 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 PI4K2AQ9BTU6 479 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 SPATA9Q9BWV2 254 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 KLK14Q9P0G3 267 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 SFMBT1Q9UHJ3 866 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ERGIC3Q9Y282 383 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 LACTBL1A8MY62 500 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ITGA10O75578 1167 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 GRAP2O75791 330 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 PGM3O95394 542 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 C7P10643 843 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 HPGDP15428 266 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 TPH1P17752 444 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ICAM3P32942 547 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 TMPRSS11AQ6ZMR5 421 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 FAM126BQ8IXS8 530 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 VGLL2Q8N8G2 317 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 SPPL2BQ8TCT7 592 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 EPS8L1Q8TE68 723 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 FEM1CQ96JP0 617 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 TMEM175Q9BSA9 504 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 GBA3Q9H227 469 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 CD320Q9NPF0 282 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 TMEM45AQ9NWC5 275 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 HMGXB4Q9UGU5 601 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 SLC27A6Q9Y2P4 619 aa7.81□□□□□ -1.16
VPS13D-211ENST00000543710 ZNF142P52746 1687 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 SPATA31C2B4DYI2 1134 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 SKAP2O75563 359 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 IPO13O94829 963 aaKnown RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 VAV1P15498 845 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 PIK3CBP42338 1070 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 PTPN9P43378 593 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 TUBP50607 506 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ZNF33AQ06730 810 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ABRQ12979 859 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 EIPR1Q53HC9 387 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 USP43Q70EL4 1123 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 OAFQ86UD1 273 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 TREML1Q86YW5 311 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms