RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 TBC1D3LB9A6J9 549 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 GOLGA8KD6RF30 607 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 GOLGA8TH3BQL2 631 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 STX7O15400 261 aaKnown RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 SLC7A4O43246 635 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TSPAN6O43657 245 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 RNGTTO60942 597 aaKnown RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 ACSL3O95573 720 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 IGLV3-19P01714 112 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 ELFN1P0C7U0 828 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TBC1D3HP0C7X1 549 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 PRSS56P0CW18 603 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TDGF1P13385 188 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 C6P13671 934 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 ZNF30P17039 623 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 BPIP17213 487 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 PSMA3P25788 255 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 NFKBIAP25963 317 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 CA5AP35218 305 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 HMGCLP35914 325 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 ETV3P41162 512 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 SPINT3P49223 89 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 SUOXP51687 545 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 PPP2CBP62714 309 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 PPP2CAP67775 309 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 FGL2Q14314 439 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 CRYMQ14894 314 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 SLMAPQ14BN4 828 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 BRD3Q15059 726 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 ACOX1Q15067 660 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 MAP7D1Q3KQU3 841 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 STEAP4Q687X5 459 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TBC1D3GQ6DHY5 549 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TBC1D3CQ6IPX1 549 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 EMBQ6PCB8 327 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 Q6ZVL8 140 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 BMP8AQ7Z5Y6 402 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TECPR1Q7Z6L1 1165 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TBC1D3Q8IZP1 549 aaPredicted RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 DTWD2Q8NBA8 298 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 GPR26Q8NDV2 337 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 CXorf40AQ8TE69 158 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 STYXQ8WUJ0 223 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 CAVIN3Q969G5 261 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 HDAC10Q969S8 669 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TOE1Q96GM8 510 aaKnown RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 CDKN2AIPNLQ96HQ2 116 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TBATAQ96M53 351 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 COQ10AQ96MF6 247 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 SRPK1Q96SB4 655 aaKnown RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 ZMYND15Q9H091 742 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 VPS37BQ9H9H4 285 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 PRMT8Q9NR22 394 aaPredicted RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 NLE1Q9NVX2 485 aaPredicted RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 WSB2Q9NYS7 404 aaPredicted RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 MBD1Q9UIS9 605 aaPredicted RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 FAM169AQ9Y6X4 670 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 ZNF318Q5VUA4 2279 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 A0A1W2PQU0 124 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 CCDC162PA2VCL2 907 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 CCDC151A5D8V7 595 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 H0Y858 1186 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 GAPDHSO14556 408 aaPredicted RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 AXIN1O15169 862 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 GPR39O43194 453 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 LAMTOR5O43504 91 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 LZTS3O60299 673 aaPredicted RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 GPR37L1O60883 481 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 RPP40O75818 363 aaKnown RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 PIAS1O75925 651 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 RECQL5O94762 991 aaPredicted RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 USP1O94782 785 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 VAPBO95292 243 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 SEMA4FO95754 770 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 TTC4O95801 387 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 POLBP06746 335 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 F7P08709 466 aaPredicted RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 H2AFXP16104 143 aaPredicted RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 ARNTP27540 789 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 AVPR2P30518 371 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 MAT2AP31153 395 aaKnown RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 HSD17B3P37058 310 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 ARCN1P48444 511 aaKnown RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 FNTBP49356 437 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 CDKN1CP49918 316 aaPredicted RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 XIAPP98170 497 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 ACVR1Q04771 509 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 CSTF1Q05048 431 aaKnown RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 CCDC15Q0P6D6 951 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 SFSWAPQ12872 951 aaKnown RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 PEX6Q13608 980 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 NR6A1Q15406 480 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 SKIDA1Q1XH10 827 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 SPANXN3Q5MJ09 141 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 BEND6Q5SZJ8 279 aaPredicted RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 ALS2CLQ60I27 953 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 TRMT10BQ6PF06 316 aaKnown RBP9.31□□□□□ -0.92
DDX55-208ENST00000541259 FBXO38Q6PIJ6 1188 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 FAM151BQ6UXP7 276 aa9.31□□□□□ -0.92
DDX55-208ENST00000541259 CEP128Q6ZU80 1094 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms