RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 LATS1O95835 1130 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 APOA4P06727 396 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 CTSAP10619 480 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 RAG1P15918 1043 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 MZF1P28698 734 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-210ENST00000538120 SCNN1BP51168 640 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 LAMB3Q13751 1172 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 TCHHL1Q5QJ38 904 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-210ENST00000538120 LILRA6Q6PI73 481 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 GAREM2Q75VX8 874 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 TMC8Q8IU68 726 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 WDR75Q8IWA0 830 aaKnown RBP10.74□□□□□ -0.69
CLIP1-210ENST00000538120 BBS5Q8N3I7 341 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 OR6P1Q8NGX9 317 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 BRSK1Q8TDC3 778 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 SH3RF2Q8TEC5 729 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 SIKE1Q9BRV8 207 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 UNKQ9C0B0 810 aaKnown RBP10.74□□□□□ -0.69
CLIP1-210ENST00000538120 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.74□□□□□ -0.69
CLIP1-210ENST00000538120 CPQQ9Y646 472 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 A0A087X1B8 175 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 CCDC162PA2VCL2 907 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 TMEM114B3SHH9 223 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 DLX3O60479 287 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 OR6B1O95007 311 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 GOT2P00505 430 aaKnown RBP10.74□□□□□ -0.69
CLIP1-210ENST00000538120 CCR10P46092 362 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 IDH3AP50213 366 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 CLCN5P51795 746 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 CYP4F8P98187 520 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 CUL3Q13618 768 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 SEMA3AQ14563 771 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 MFSD4BQ5TF39 518 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 FBXO46Q6PJ61 603 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-210ENST00000538120 LINGO4Q6UY18 593 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 HPS6Q86YV9 775 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 FAM217AQ8IXS0 508 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 TMEM199Q8N511 208 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 ZNF781Q8N8C0 355 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 WFDC5Q8TCV5 224 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 HEXDCQ8WVB3 486 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 PEX13Q92968 403 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 ALG14Q96F25 216 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 CHCHD3Q9NX63 227 aaKnown RBP10.74□□□□□ -0.69
CLIP1-210ENST00000538120 XPR1Q9UBH6 696 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 RIMKLBQ9ULI2 386 aa10.74□□□□□ -0.69
CLIP1-210ENST00000538120 MTF2Q9Y483 593 aaPredicted RBP10.74□□□□□ -0.69
CLIP1-210ENST00000538120 MIA3Q5JRA6 1907 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 PTPRSQ13332 1948 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 DYTNA2CJ06 578 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 FKBP6O75344 327 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 RPP40O75818 363 aaKnown RBP10.73□□□□□ -0.69
CLIP1-210ENST00000538120 BAIAP3O94812 1187 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 C1RP00736 705 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 HDCP19113 662 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 PPM1AP35813 382 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 CDKN2DP55273 166 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 HTRA4P83105 476 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-210ENST00000538120 TIAL1Q01085 375 aaKnown RBP eCLIP10.73□□□□□ -0.69
CLIP1-210ENST00000538120 HECTD2Q5U5R9 776 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 LIPMQ5VYY2 423 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 ZNF549Q6P9A3 640 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 FBXL19Q6PCT2 694 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 TMEM207Q6UWW9 146 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 ZNF783Q6ZMS7 281 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 ITIH5Q86UX2 942 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 CARNMT1Q8N4J0 409 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 GPR150Q8NGU9 434 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 PPP4R1Q8TF05 950 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 GDPD5Q8WTR4 605 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 TDRD1Q9BXT4 1180 aaKnown RBP10.73□□□□□ -0.69
CLIP1-210ENST00000538120 DNAJC28Q9NX36 388 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 DNMT3BQ9UBC3 853 aaKnown RBP10.73□□□□□ -0.69
CLIP1-210ENST00000538120 MID2Q9UJV3 735 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 TMCC1O94876 653 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 ATP5BP06576 529 aaKnown RBP10.73□□□□□ -0.69
CLIP1-210ENST00000538120 CHRNGP07510 517 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 PRSS56P0CW18 603 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 PSMA3P25788 255 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 GABRR2P28476 465 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 GRIA4P48058 902 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 ZNF140P52738 457 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-210ENST00000538120 PRAMEP78395 509 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 USP4Q13107 963 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 SLC5A9Q2M3M2 681 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 PABPC1LQ4VXU2 614 aaKnown RBP10.73□□□□□ -0.69
CLIP1-210ENST00000538120 ACAD11Q709F0 780 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 SATL1Q86VE3 508 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 PHTF2Q8N3S3 785 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 MDGA1Q8NFP4 955 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 ANKRD49Q8WVL7 239 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 TSNARE1Q96NA8 513 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 FEM1AQ9BSK4 669 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 DRC3Q9H069 523 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 CDH19Q9H159 772 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 STN1Q9H668 368 aaKnown RBP10.73□□□□□ -0.69
CLIP1-210ENST00000538120 IL23AQ9NPF7 189 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 LHX3Q9UBR4 397 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 VWA7Q9Y334 891 aa10.73□□□□□ -0.69
CLIP1-210ENST00000538120 PLXNA4Q9HCM2 1894 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms