RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ADAMTS14Q8WXS8 1223 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 PDXPQ96GD0 296 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 COX14Q96I36 57 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 CNDP2Q96KP4 475 aaKnown RBP12.93□□□□□ -0.34
VPS28-216ENST00000533806 SRPK1Q96SB4 655 aaKnown RBP12.93□□□□□ -0.34
VPS28-216ENST00000533806 TMEM121Q9BTD3 319 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 RIOK2Q9BVS4 552 aaKnown RBP12.93□□□□□ -0.34
VPS28-216ENST00000533806 FRMD8Q9BZ67 464 aaPredicted RBP12.93□□□□□ -0.34
VPS28-216ENST00000533806 SPASTQ9UBP0 616 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 FTSJ1Q9UET6 329 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 APOBEC3BQ9UH17 382 aaKnown RBP12.93□□□□□ -0.34
VPS28-216ENST00000533806 CD84Q9UIB8 345 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 SLC17A4Q9Y2C5 497 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 ZNF711Q9Y462 761 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 BPTFQ12830 3046 aa12.93□□□□□ -0.34
VPS28-216ENST00000533806 TP53BP1Q12888 1972 aaPredicted RBP12.92□□□□□ -0.34
VPS28-216ENST00000533806 FRYQ5TBA9 3013 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 ASPMQ8IZT6 3477 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 H3BM21 787 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 PDE2AO00408 941 aaPredicted RBP12.92□□□□□ -0.34
VPS28-216ENST00000533806 ENC1O14682 589 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 YY2O15391 372 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 STK10O94804 968 aaKnown RBP12.92□□□□□ -0.34
VPS28-216ENST00000533806 RASGRP1O95267 797 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 TRIM16O95361 564 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 METTL18O95568 372 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 TOP3BO95985 862 aaKnown RBP12.92□□□□□ -0.34
VPS28-216ENST00000533806 AGTP01019 485 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 CKMT2P17540 419 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 HLA-DPA1P20036 260 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 KCNA4P22459 653 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 KELP23276 732 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 ACP1P24666 158 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 STIP1P31948 543 aaKnown RBP12.92□□□□□ -0.34
VPS28-216ENST00000533806 HMGCLP35914 325 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 ACADVLP49748 655 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 BLKP51451 505 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 GEMP55040 296 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 DCDC1P59894 354 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 GSE1Q14687 1217 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 PARP6Q2NL67 630 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 PRRT3Q5FWE3 981 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 FAXCQ5TGI0 409 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 CCDC70Q6NSX1 233 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 DRICH1Q6PGQ1 229 aaPredicted RBP12.92□□□□□ -0.34
VPS28-216ENST00000533806 SDR16C5Q8N3Y7 309 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 PNPLA1Q8N8W4 532 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 GPR26Q8NDV2 337 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 IPMKQ8NFU5 416 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 ATL2Q8NHH9 583 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 CCHCR1Q8TD31 782 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 LMX1AQ8TE12 382 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 PTCD2Q8WV60 388 aaKnown RBP12.92□□□□□ -0.34
VPS28-216ENST00000533806 BOCQ9BWV1 1114 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 SLC13A1Q9BZW2 595 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 CDH19Q9H159 772 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 FAM83DQ9H4H8 585 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 TRABDQ9H4I3 376 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 ARNT2Q9HBZ2 717 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 PHPT1Q9NRX4 125 aaPredicted RBP12.92□□□□□ -0.34
VPS28-216ENST00000533806 KLQ9UEF7 1012 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 SHOC2Q9UQ13 582 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 APOBEC2Q9Y235 224 aaKnown RBP12.92□□□□□ -0.34
VPS28-216ENST00000533806 AAR2Q9Y312 384 aaKnown RBP12.92□□□□□ -0.34
VPS28-216ENST00000533806 JRKLQ9Y4A0 524 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 PCDHGA1Q9Y5H4 931 aa12.92□□□□□ -0.34
VPS28-216ENST00000533806 PRSS38A1L453 326 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 FADS2P1A8MWK0 482 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 FFAR2O15552 330 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 ZSCAN12O43309 604 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 FGF1P05230 155 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 PTMAP06454 111 aaKnown RBP12.91□□□□□ -0.34
VPS28-216ENST00000533806 PYGLP06737 847 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 CELA2BP08218 269 aaPredicted RBP12.91□□□□□ -0.34
VPS28-216ENST00000533806 CKMT1AP12532 417 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 BPIP17213 487 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 CXCR5P32302 372 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 GPR1P46091 355 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 DNAJC3Q13217 504 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 OLIG2Q13516 323 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 C1orf61Q13536 156 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 CCNG2Q16589 344 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 RAET1GQ6H3X3 334 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 LVRNQ6Q4G3 990 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 HID1Q8IV36 788 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 RASGEF1CQ8N431 466 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 FSTL5Q8N475 847 aaPredicted RBP12.91□□□□□ -0.34
VPS28-216ENST00000533806 SLC25A41Q8N5S1 370 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 DTX3LQ8TDB6 740 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 C1orf54Q8WWF1 131 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 ANP32BQ92688 251 aaKnown RBP12.91□□□□□ -0.34
VPS28-216ENST00000533806 HIC2Q96JB3 615 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 PPP1R2P1Q96PQ5 205 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 DUSP23Q9BVJ7 150 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 MRPL40Q9NQ50 206 aaKnown RBP12.91□□□□□ -0.34
VPS28-216ENST00000533806 PKD2L2Q9NZM6 624 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 HACD3Q9P035 362 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 IL17CQ9P0M4 197 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 ZKSCAN5Q9Y2L8 839 aa12.91□□□□□ -0.34
VPS28-216ENST00000533806 ST14Q9Y5Y6 855 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms