RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 IFRD1O00458 451 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 CXCL14O95715 111 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 SGCGQ13326 291 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 MILR1Q7Z6M3 343 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 CMC1Q7Z7K0 106 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 PKP2Q99959 881 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 PNPLA8Q9NP80 782 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 CACNA2D2Q9NY47 1150 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 KLHL20Q9Y2M5 609 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 MYOCOSA0A1B0GUC4 107 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 PDE9AO76083 593 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 ZNF682O95780 498 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 ADH1AP07327 375 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 ABCB1P08183 1280 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 CYP2A6P11509 494 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 GRIA4P48058 902 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 CCNIQ14094 377 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 CRY1Q16526 586 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 UBAP2Q5T6F2 1119 aaKnown RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 ATAD3BQ5T9A4 648 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 SH3PXD2AQ5TCZ1 1133 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 CYP2U1Q7Z449 544 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 GPSM1Q86YR5 675 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 EID3Q8N140 333 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 CNTD1Q8N815 330 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 OR56A4Q8NGH8 313 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 VPS33AQ96AX1 596 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 HGH1Q9BTY7 390 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 PTBP2Q9UKA9 531 aaKnown RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 TYMPP19971 482 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 WNT3AP56704 352 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 HSPA14Q0VDF9 509 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 FAM182AQ5T1J6 154 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 OGFRL1Q5TC84 451 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 OTOP2Q7RTS6 562 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 TSPAN18Q96SJ8 248 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 HNRNPABQ99729 332 aaKnown RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 WDR55Q9H6Y2 383 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 TLL1O43897 1013 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 SEC22BO75396 215 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 INHAP05111 366 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 CFHP08603 1231 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 LTA4HP09960 611 aaKnown RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 SETMARQ53H47 684 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 TRAPPC5Q8IUR0 188 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 MCFD2Q8NI22 146 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 NPLOC4Q8TAT6 608 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 DPY30Q9C005 99 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 DIABLOQ9NR28 239 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 SMPD3Q9NY59 655 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-213ENST00000514442 ERVK-11Q9UQG0 969 aa13.12□□□□□ -0.31
TCOF1-213ENST00000514442 A0A1W2PPW3 197 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 RPL17P18621 184 aaKnown RBP13.11□□□□□ -0.31
TCOF1-213ENST00000514442 ALDH9A1P49189 494 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 IL2P60568 153 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 ECT2LQ008S8 904 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 HNRNPDQ14103 355 aaKnown RBP13.11□□□□□ -0.31
TCOF1-213ENST00000514442 BRMS1LQ5PSV4 323 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 DENND5AQ6IQ26 1287 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 UGT2A3Q6UWM9 527 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 IFNL1Q8IU54 200 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 NAT16Q8N8M0 369 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 USP29Q9HBJ7 922 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 ARL15Q9NXU5 204 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 AGO1Q9UL18 857 aaKnown RBP13.11□□□□□ -0.31
TCOF1-213ENST00000514442 NUP188Q5SRE5 1749 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 DNAJA2O60884 412 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 IGFBP4P22692 258 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 CSTF3Q12996 717 aaKnown RBP13.11□□□□□ -0.31
TCOF1-213ENST00000514442 HERC3Q15034 1050 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 TGFBIQ15582 683 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 INSCQ1MX18 579 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 ZC3H12BQ5HYM0 836 aaKnown RBP13.11□□□□□ -0.31
TCOF1-213ENST00000514442 RHBDF2Q6PJF5 856 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 ZNF276Q8N554 614 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.11□□□□□ -0.31
TCOF1-213ENST00000514442 SUSD6Q92537 303 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 EHD3Q9NZN3 535 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 TMEM9Q9P0T7 183 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 GLUD2P49448 558 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 SEPHS1P49903 392 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 SNRPD1P62314 119 aaKnown RBP13.11□□□□□ -0.31
TCOF1-213ENST00000514442 FOXB2Q5VYV0 432 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 PTGR2Q8N8N7 351 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-213ENST00000514442 HJURPQ8NCD3 748 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-213ENST00000514442 SPPL2BQ8TCT7 592 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 HDAC10Q969S8 669 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 PRR11Q96HE9 360 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-213ENST00000514442 UGT2B28Q9BY64 529 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 RHOBTB2Q9BYZ6 727 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 OCEL1Q9H607 264 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 POLG2Q9UHN1 485 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 A0A1B0GW55 424 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 DUX4L2P0CJ85 424 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 DUX4L3P0CJ86 424 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 DUX4L4P0CJ87 422 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 DUX4L5P0CJ88 424 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 DUX4L6P0CJ89 424 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 DUX4L7P0CJ90 424 aa13.11□□□□□ -0.31
TCOF1-213ENST00000514442 TFEBP19484 476 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms