RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 NOP9Q86U38 636 aaKnown RBP10.89□□□□□ -0.67
DDX41-216ENST00000513562 NCSTNQ92542 709 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 OR2M4Q96R27 311 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 TRIM55Q9BYV6 548 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 CATSPERBQ9H7T0 1116 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 SARS2Q9NP81 518 aaKnown RBP10.89□□□□□ -0.67
DDX41-216ENST00000513562 KCND3Q9UK17 655 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 PCDHGA6Q9Y5G7 932 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 DOPEY1Q5JWR5 2465 aa10.89□□□□□ -0.67
DDX41-216ENST00000513562 MN1Q10571 1320 aaPredicted RBP10.88□□□□□ -0.67
DDX41-216ENST00000513562 TCP11X1B4DZS4 312 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 INPP4BO15327 924 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 FGF10O15520 208 aaPredicted RBP10.88□□□□□ -0.67
DDX41-216ENST00000513562 KATNA1O75449 491 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 PALMO75781 387 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 EML2O95834 649 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 MMP8P22894 467 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 VIPR1P32241 457 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 ETV3P41162 512 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 PGDP52209 483 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 NDST2P52849 883 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 EPHA4P54764 986 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 HHEXQ03014 270 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 NSUN2Q08J23 767 aaKnown RBP eCLIP10.88□□□□□ -0.67
DDX41-216ENST00000513562 MRPL49Q13405 166 aaKnown RBP10.88□□□□□ -0.67
DDX41-216ENST00000513562 LRP8Q14114 963 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 EIF2S3LQ2VIR3 472 aaKnown RBP10.88□□□□□ -0.67
DDX41-216ENST00000513562 RAET1GQ6H3X3 334 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 DOK6Q6PKX4 331 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 LYSMD3Q7Z3D4 306 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 CBARPQ8N350 705 aaPredicted RBP10.88□□□□□ -0.67
DDX41-216ENST00000513562 PAF1Q8N7H5 531 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 GALNT6Q8NCL4 622 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 EPS8L1Q8TE68 723 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 STAMBPL1Q96FJ0 436 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 NSMCE3Q96MG7 304 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 TWSG1Q9GZX9 223 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 MLXIPLQ9NP71 852 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 RCOR3Q9P2K3 495 aaPredicted RBP10.88□□□□□ -0.67
DDX41-216ENST00000513562 KLHL3Q9UH77 587 aa10.88□□□□□ -0.67
DDX41-216ENST00000513562 PCDHGA9Q9Y5G4 932 aaKnown RBP10.88□□□□□ -0.67
DDX41-216ENST00000513562 TRBV23OR9-2A0A075B6M9 112 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 GOLGA6L4A6NEF3 574 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 GOLGA6L3A6NEY3 463 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 BIN1O00499 593 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 CREB3O43889 395 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 CREG1O75629 220 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 SOD1P00441 154 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 LDLRP01130 860 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 MMEP08473 750 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 LHCGRP22888 699 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 AP1S1P61966 158 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 DPTQ07507 201 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 NFATC2Q13469 925 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 INPP5JQ15735 1006 aaPredicted RBP10.87□□□□□ -0.67
DDX41-216ENST00000513562 PYCR3Q53H96 274 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 PRR30Q53SZ7 412 aaPredicted RBP10.87□□□□□ -0.67
DDX41-216ENST00000513562 C1QL3Q5VWW1 255 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 PAPD7Q5XG87 772 aaKnown RBP10.87□□□□□ -0.67
DDX41-216ENST00000513562 HSD11B1LQ7Z5J1 315 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 CREBRFQ8IUR6 639 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 TCTN2Q96GX1 697 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 CELF6Q96J87 481 aaKnown RBP10.87□□□□□ -0.67
DDX41-216ENST00000513562 PHF12Q96QT6 1004 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 CINPQ9BW66 212 aaPredicted RBP10.87□□□□□ -0.67
DDX41-216ENST00000513562 EPB41L1Q9H4G0 881 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 STN1Q9H668 368 aaKnown RBP10.87□□□□□ -0.67
DDX41-216ENST00000513562 DONSONQ9NYP3 566 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 ERRFI1Q9UJM3 462 aaPredicted RBP10.87□□□□□ -0.67
DDX41-216ENST00000513562 FHOD1Q9Y613 1164 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 ANKRD36A6QL64 1941 aa10.87□□□□□ -0.67
DDX41-216ENST00000513562 PIPSLA2A3N6 862 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 GOLGA6CA6NDK9 693 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 GOLGA6BA6NDN3 693 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 PSMD11O00231 422 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 HTRA2O43464 458 aaPredicted RBP10.86□□□□□ -0.67
DDX41-216ENST00000513562 KIAA0754O94854 1291 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 NDUFA10O95299 355 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 CYP1A1P04798 512 aaPredicted RBP10.86□□□□□ -0.67
DDX41-216ENST00000513562 GOLGA6DP0CG33 693 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 GPD1P21695 349 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 HTR7P34969 479 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 GARSP41250 739 aaKnown RBP10.86□□□□□ -0.67
DDX41-216ENST00000513562 PAPOLAP51003 745 aaKnown RBP10.86□□□□□ -0.67
DDX41-216ENST00000513562 SCNN1BP51168 640 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 AIF1P55008 147 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 GSCP56915 257 aaPredicted RBP10.86□□□□□ -0.67
DDX41-216ENST00000513562 FOXM1Q08050 763 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 DNASE1L3Q13609 305 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 RFTN1Q14699 578 aaPredicted RBP10.86□□□□□ -0.67
DDX41-216ENST00000513562 DENND2CQ68D51 928 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 IYDQ6PHW0 289 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 ADAMTSL4Q6UY14 1074 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 Q6ZVL8 140 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 GALNT13Q8IUC8 556 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 PLXDC1Q8IUK5 500 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 PRR7Q8TB68 274 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 FNIP1Q8TF40 1166 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 SH3KBP1Q96B97 665 aa10.86□□□□□ -0.67
DDX41-216ENST00000513562 RNF31Q96EP0 1072 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms