RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 COX4I2Q96KJ9 171 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 PNMA8BQ9ULN7 279 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 POLR3HQ9Y535 204 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 PCDHB7Q9Y5E2 793 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 ARAP2Q8WZ64 1704 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 H3BMM5 538 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 NRP1O14786 923 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 RPLP2P05387 115 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 MBL2P11226 248 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 POU1F1P28069 291 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 HTR7P34969 479 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 MTHFRP42898 656 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 PGGT1BP53609 377 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 RBM20Q5T481 1227 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 SMYD5Q6GMV2 418 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 STX19Q8N4C7 294 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 RTL3Q8N8U3 475 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 EMID1Q96A84 441 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 SH3KBP1Q96B97 665 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 AKTIPQ9H8T0 292 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 FANCEQ9HB96 536 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 ADGRE2Q9UHX3 823 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 MYH14Q7Z406 1995 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 PHLPP1O60346 1717 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 LINC00854A0A1B0GVQ3 168 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 RNASEH2AO75792 299 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 OTCP00480 354 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 THRBP10828 461 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 MTHFD1P11586 935 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 LPOP22079 712 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 PROZP22891 400 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 DGKAP23743 735 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 HUNKP57058 714 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 GALNT2Q10471 571 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 TRAF3Q13114 568 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 MTA1Q13330 715 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 HNRNPDQ14103 355 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 CCNYL2Q5T2Q4 361 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 EGFLAMQ63HQ2 1017 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 TMEM214Q6NUQ4 689 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 GALNT18Q6P9A2 607 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 CXCL17Q6UXB2 119 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 DLK2Q6UY11 383 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 C16orf59Q7L2K0 433 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 KBTBD6Q86V97 674 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 OSTM1Q86WC4 334 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 OR4K2Q8NGD2 314 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 GPR21Q99679 349 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 KIFC1Q9BW19 673 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 CACNA2D2Q9NY47 1150 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 A0A0G2JLL6 359 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 MGAT4DA6NG13 374 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 TP73O15350 636 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 ZBTB11O95625 1053 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 GOT2P00505 430 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 HLA-DQB2P05538 268 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 RHOQP17081 205 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 IL4RP24394 825 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 ATP6V1E1P36543 226 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 HPCAP84074 193 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 PRKCQQ04759 706 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 IKBKEQ14164 716 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 RRM2BQ7LG56 351 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 PRRT2Q7Z6L0 340 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 TRIM69Q86WT6 500 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 GPR152Q8TDT2 470 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 SELENOMQ8WWX9 145 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 SLC47A1Q96FL8 570 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 HMCESQ96FZ2 354 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 CHID1Q9BWS9 393 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 ABT1Q9ULW3 272 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 OAZ3Q9UMX2 235 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 TDRKHQ9Y2W6 561 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 SH3BP1Q9Y3L3 701 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 GMPPBQ9Y5P6 360 aa8.39□□□□□ -1.07
LIMCH1-216ENST00000512820 MAST2Q6P0Q8 1798 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 IGKV6-21A0A0C4DH24 114 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 FAM72CH0Y354 149 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 DENRO43583 198 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 SIX3O95343 332 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 AKR1A1P14550 325 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 MC4RP32245 332 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ZNF846Q147U1 533 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 MYLK3Q32MK0 819 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ZBED5Q49AG3 693 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 NOMO2Q5JPE7 1267 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 LDLRAP1Q5SW96 308 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 FAM72AQ5TYM5 149 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 FAM72DQ6L9T8 149 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 CRTC3Q6UUV7 619 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 CTU1Q7Z7A3 348 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 ADAMTSL2Q86TH1 951 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 TMEM135Q86UB9 458 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 FAM72BQ86X60 149 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 PARP8Q8N3A8 854 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 OLIG1Q8TAK6 271 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 MAPK15Q8TD08 544 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 MZB1Q8WU39 189 aa8.38□□□□□ -1.07
LIMCH1-216ENST00000512820 TEX12Q9BXU0 123 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms