RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 TRIM55Q9BYV6 548 aa11.52□□□□□ -0.57
RNF4-216ENST00000511859 STN1Q9H668 368 aaKnown RBP11.52□□□□□ -0.57
RNF4-216ENST00000511859 SLAMF7Q9NQ25 335 aa11.52□□□□□ -0.57
RNF4-216ENST00000511859 UBA2Q9UBT2 640 aaPredicted RBP11.52□□□□□ -0.57
RNF4-216ENST00000511859 PADI1Q9ULC6 663 aa11.52□□□□□ -0.57
RNF4-216ENST00000511859 ZNF451Q9Y4E5 1061 aa11.52□□□□□ -0.57
RNF4-216ENST00000511859 MDC1Q14676 2089 aaKnown RBP11.52□□□□□ -0.57
RNF4-216ENST00000511859 CSMD2Q7Z408 3487 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 TRBV23OR9-2A0A075B6M9 112 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 RASA4BC9J798 803 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 FOXN3O00409 490 aaPredicted RBP11.51□□□□□ -0.57
RNF4-216ENST00000511859 RASA4O43374 803 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 HNRNPRO43390 633 aaKnown RBP11.51□□□□□ -0.57
RNF4-216ENST00000511859 DPM1O60762 260 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 MT-ND3P03897 115 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 ANKRD34CP0C6C1 535 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 EPHB2P29323 1055 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 GARSP41250 739 aaKnown RBP11.51□□□□□ -0.57
RNF4-216ENST00000511859 HHEXQ03014 270 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 BCL2L1Q07817 233 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 FOXM1Q08050 763 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 NSUN2Q08J23 767 aaKnown RBP eCLIP11.51□□□□□ -0.57
RNF4-216ENST00000511859 JMJD6Q6NYC1 403 aaPredicted RBP11.51□□□□□ -0.57
RNF4-216ENST00000511859 GBP6Q6ZN66 633 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 STRADAQ7RTN6 431 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 SRLQ86TD4 932 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 ZNF761Q86XN6 746 aaPredicted RBP11.51□□□□□ -0.57
RNF4-216ENST00000511859 PLXDC1Q8IUK5 500 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 PAF1Q8N7H5 531 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 GPT2Q8TD30 523 aa11.51□□□□□ -0.57
RNF4-216ENST00000511859 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.51□□□□□ -0.57
RNF4-216ENST00000511859 SARS2Q9NP81 518 aaKnown RBP11.51□□□□□ -0.57
RNF4-216ENST00000511859 SIDT1Q9NXL6 827 aaKnown RBP11.51□□□□□ -0.57
RNF4-216ENST00000511859 HOOK1Q9UJC3 728 aaKnown RBP11.51□□□□□ -0.57
RNF4-216ENST00000511859 NAV3Q8IVL0 2385 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 SEC16AO15027 2179 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 HIVEP1P15822 2718 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 A6NCN8 305 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 GOLGA6L3A6NEY3 463 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 WASH4PA8MWX3 477 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 A8MX80 341 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 C21orf140B9A014 251 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 GOLGA8SH3BPF8 625 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 CD44P16070 742 aaKnown RBP11.5□□□□□ -0.57
RNF4-216ENST00000511859 ZNF28P17035 718 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 NFKBIAP25963 317 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 SDC4P31431 198 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 CASP14P31944 242 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 POLD2P49005 469 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 DNASE1L3Q13609 305 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 LRP8Q14114 963 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 CAMK4Q16566 473 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 CDO1Q16878 200 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 EXOC3L4Q17RC7 722 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 KRTAP21-3Q3LHN1 58 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 KLHL10Q6JEL2 608 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 PHLDB2Q86SQ0 1253 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 RASGRP3Q8IV61 690 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 TP53INP2Q8IXH6 220 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 FAM71AQ8IYT1 594 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 UMODL1-AS1Q8N2C9 162 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 CBARPQ8N350 705 aaPredicted RBP11.5□□□□□ -0.57
RNF4-216ENST00000511859 LZTR1Q8N653 840 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 PTCD2Q8WV60 388 aaKnown RBP11.5□□□□□ -0.57
RNF4-216ENST00000511859 NELFBQ8WX92 580 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 SPOCK2Q92563 424 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 NTAN1Q96AB6 310 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 OR2M4Q96R27 311 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 MAGEB5Q9BZ81 275 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 CATSPERBQ9H7T0 1116 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 ACSS2Q9NR19 701 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 MAP10Q9P2G4 905 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 KLHL3Q9UH77 587 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 PHTF1Q9UMS5 762 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 PLEKHM1Q9Y4G2 1056 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 PDZD2O15018 2839 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 MTORP42345 2549 aa11.5□□□□□ -0.57
RNF4-216ENST00000511859 SVILO95425 2214 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 A0A1W2PQ67 120 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 GTPBP10A4D1E9 387 aaKnown RBP11.49□□□□□ -0.57
RNF4-216ENST00000511859 TRAFD1O14545 582 aaPredicted RBP11.49□□□□□ -0.57
RNF4-216ENST00000511859 TOX3O15405 576 aaPredicted RBP11.49□□□□□ -0.57
RNF4-216ENST00000511859 KIAA0754O94854 1291 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 NDUFA10O95299 355 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 CBX6O95503 412 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 FGFR1OPO95684 399 aaKnown RBP11.49□□□□□ -0.57
RNF4-216ENST00000511859 GRNP28799 593 aaKnown RBP11.49□□□□□ -0.57
RNF4-216ENST00000511859 CCL11P51671 97 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 CHRNA6Q15825 494 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 UGT8Q16880 541 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 C15orf59Q2T9L4 293 aaPredicted RBP11.49□□□□□ -0.57
RNF4-216ENST00000511859 CCDC14Q49A88 953 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 PYCR3Q53H96 274 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 RAB6CQ53S08 254 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 C2CD6Q53TS8 623 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 ZRANB3Q5FWF4 1079 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 RAET1GQ6H3X3 334 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 SLC9B2Q86UD5 537 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 EMC1Q8N766 993 aa11.49□□□□□ -0.57
RNF4-216ENST00000511859 Q8NA96 180 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms