RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 APOC2P02655 101 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 LRRC26Q2I0M4 334 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 PLEKHG6Q3KR16 790 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 ZBTB41Q5SVQ8 909 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 CHDHQ8NE62 594 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 RIT1Q92963 219 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 TRAF4Q9BUZ4 470 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 ZBTB20Q9HC78 741 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 DIMT1Q9UNQ2 313 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 PCDHGB6Q9Y5F9 930 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 MAGEB16A2A368 324 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 PABPN1LA6NDY0 278 aaKnown RBP12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 NOBOXO60393 691 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 NDUFB10O96000 172 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 CYBBP04839 570 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 THRBP10828 461 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 RFC2P35250 354 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 TALDO1P37837 337 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 CD47Q08722 323 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 PRKAA1Q13131 559 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 STARD3Q14849 445 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 TRIM60Q495X7 471 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 GRTP1Q5TC63 336 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 DENND5AQ6IQ26 1287 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 PLPP6Q8IY26 295 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 SAMD14Q8IZD0 417 aaPredicted RBP12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 EMC1Q8N766 993 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 PGLYRP2Q96PD5 576 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 FEM1AQ9BSK4 669 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 CDADC1Q9BWV3 514 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 CEP41Q9BYV8 373 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 NMRAL1Q9HBL8 299 aa12.03□□□□□ -0.48
LIMCH1-213ENST00000511496 A0A096LPK6 155 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 H0YAE9 185 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 NME4O00746 187 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 TBC1D4O60343 1298 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 PLA2G6O60733 806 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 PAHP00439 452 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 IFNA16P05015 189 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 TGFB3P10600 412 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 AKR1D1P51857 326 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 GTF2A2P52657 109 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 INCA1Q0VD86 236 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 FAPQ12884 760 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 PPP1R8Q12972 351 aaKnown RBP12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 PIGHQ14442 188 aaPredicted RBP12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 CTU2Q2VPK5 515 aaKnown RBP12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 GPAT3Q53EU6 434 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 WDR44Q5JSH3 913 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 ARMC4Q5T2S8 1044 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 GPATCH4Q5T3I0 446 aaKnown RBP12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 GLYATQ6IB77 296 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 TMEM65Q6PI78 240 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 ERO1BQ86YB8 467 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 OR8H3Q8N146 312 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 MYRFLQ96LU7 910 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 CPXM1Q96SM3 734 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 DDX4Q9NQI0 724 aaKnown RBP12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 PRDM11Q9NQV5 511 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 TLR9Q9NR96 1032 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 GGA3Q9NZ52 723 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 ERVK-18Q9QC07 812 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 TRMT6Q9UJA5 497 aaKnown RBP12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 ATF5Q9Y2D1 282 aaPredicted RBP12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 MARF1Q9Y4F3 1742 aaKnown RBP12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 MAST2Q6P0Q8 1798 aa12.02□□□□□ -0.48
LIMCH1-213ENST00000511496 HMX3A6NHT5 357 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC16A4O15374 487 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 FADS2O95864 444 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 EGFRP00533 1210 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 CCNYL3P0C7X3 344 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 C7P10643 843 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 TAL1P17542 331 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 SLC15A1P46059 708 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 PSMD8P48556 350 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF543Q08ER8 600 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 MGAT3Q09327 533 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 HADHQ16836 314 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 SYT16Q17RD7 645 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 PARP15Q460N3 678 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 FAM219BQ5XKK7 198 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 PNCKQ6P2M8 343 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 ZNF677Q86XU0 584 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 UBE2J2Q8N2K1 259 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 MCOLN3Q8TDD5 553 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 AKAP1Q92667 903 aaKnown RBP eCLIP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 P2RX7Q99572 595 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 GDF15Q99988 308 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 TASP1Q9H6P5 420 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 SMURF2Q9HAU4 748 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 MAGED2Q9UNF1 606 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 DAGLAQ9Y4D2 1042 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 LAMB1P07942 1786 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 AQP12BA6NM10 295 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 UBDO15205 165 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 RGS20O76081 388 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 ARSFP54793 590 aa12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 SRP54P61011 504 aaKnown RBP12.02□□□□□ -0.49
LIMCH1-213ENST00000511496 TFDP2Q14188 446 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 136.9 ms