RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TAS2R40P59535 323 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 MRPS34P82930 218 aaKnown RBP4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 DSC1Q08554 894 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 EIF2S3LQ2VIR3 472 aaKnown RBP4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 PPP6R3Q5H9R7 873 aaPredicted RBP4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 CFAP77Q6ZQR2 320 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 CLEC17AQ6ZS10 378 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 TAOK1Q7L7X3 1001 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 OR8H2Q8N162 312 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 POC5Q8NA72 575 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 OR8K5Q8NH50 307 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 ASB5Q8WWX0 329 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 OIT3Q8WWZ8 545 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 TXNDC15Q96J42 360 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 FCRL4Q96PJ5 515 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 CENPOQ9BU64 300 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 C1QTNF1Q9BXJ1 281 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 TEX12Q9BXU0 123 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 KCNN2Q9H2S1 579 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 MMP25Q9NPA2 562 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 LTB4R2Q9NPC1 389 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 CNGB3Q9NQW8 809 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 CMAHPQ9Y471 501 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 PASKQ96RG2 1323 aa4.1□□□□□ -1.75
HMGB1P28-201ENST00000507778 H3BQ06 376 aaPredicted RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 ATP2A1O14983 1001 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 CH25HO95992 272 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 SELLP14151 372 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 ANXA7P20073 488 aaKnown RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 SCP2P22307 547 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 UBA1P22314 1058 aaKnown RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 C21orf33P30042 268 aaPredicted RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 NNMTP40261 264 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 SLC15A1P46059 708 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 IFI35P80217 286 aaPredicted RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 BECN1Q14457 450 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 EFNB3Q15768 340 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 PNLIPRP3Q17RR3 467 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 TDRD12Q587J7 1177 aaKnown RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 CRELD2Q6UXH1 353 aaPredicted RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 TSPAN33Q86UF1 283 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 PRR26Q8N8Z3 221 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 OR14A16Q8NHC5 309 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 SMG7Q92540 1137 aaKnown RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 MOAP1Q96BY2 351 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 ERP27Q96DN0 273 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 ZNF48Q96MX3 618 aaPredicted RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 KXD1Q9BQD3 176 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 SLC25A33Q9BSK2 321 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 HAUS8Q9BT25 410 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 EBF3Q9H4W6 596 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 PDE7BQ9NP56 450 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 ACSS1Q9NUB1 689 aaPredicted RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 COPG2Q9UBF2 871 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 RNF7Q9UBF6 113 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 UBA2Q9UBT2 640 aaPredicted RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 OR14J1Q9UGF5 321 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 SEC63Q9UGP8 760 aaKnown RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 FBXW11Q9UKB1 542 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 AGO1Q9UL18 857 aaKnown RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 MYO6Q9UM54 1294 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 CLIC4Q9Y696 253 aa4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 ATXN2Q99700 1313 aaKnown RBP4.09□□□□□ -1.75
HMGB1P28-201ENST00000507778 hDV102S1A0JD36 115 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 MYMKA6NI61 221 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 LRRC72A6NJI9 287 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 CD8B2A6NJW9 211 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 OGG1O15527 345 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 ENTPD3O75355 529 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 SERPINI2O75830 405 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 PGM3O95394 542 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 HOXC6P09630 235 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 RRM1P23921 792 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 ACADLP28330 430 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 NRIP1P48552 1158 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 RRP1P56182 461 aaKnown RBP4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 PSMC6P62333 389 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 CSNK2A1P68400 391 aaPredicted RBP4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 MRPS5P82675 430 aaKnown RBP4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 Q0VFX4 171 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 NTRK2Q16620 822 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 AMZ1Q400G9 498 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 ZNF805Q5CZA5 627 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 TMCO3Q6UWJ1 677 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 SLC36A4Q6YBV0 504 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 LSMEM1Q8N8F7 131 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 CSNK2A3Q8NEV1 391 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 ARHGEF40Q8TER5 1519 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 ADAMTS14Q8WXS8 1223 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 RND1Q92730 232 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 VOPP1Q96AW1 172 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 NUDCD1Q96RS6 583 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 GAD1Q99259 594 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 HRH4Q9H3N8 390 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 WDR26Q9H7D7 661 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 C17orf75Q9HAS0 396 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 GIMAP4Q9NUV9 329 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 MTMR10Q9NXD2 777 aa4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 MRPL15Q9P015 296 aaKnown RBP4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 SLC9A2Q9UBY0 812 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms