RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 SLC14A1Q13336 389 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 PTK6Q13882 451 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 INPP5AQ14642 412 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 TPSAB1Q15661 275 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 CNGA3Q16281 694 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 WSCD2Q2TBF2 565 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 DNAJC21Q5F1R6 531 aaKnown RBP8.25□□□□□ -1.09
SF3A1-208ENST00000485618 KCTD11Q693B1 232 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 RAET1GQ6H3X3 334 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 PNCKQ6P2M8 343 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 UNQ6494/PRO21346Q6UXR6 183 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 Q6ZVL8 140 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 LYSMD3Q7Z3D4 306 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 PTAR1Q7Z6K3 402 aaPredicted RBP8.25□□□□□ -1.09
SF3A1-208ENST00000485618 CTAGE6Q86UF2 777 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 CTAGE4Q8IX94 777 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 KLHDC8BQ8IXV7 354 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 PPIL6Q8IXY8 311 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 CBARPQ8N350 705 aaPredicted RBP8.25□□□□□ -1.09
SF3A1-208ENST00000485618 TMEM145Q8NBT3 493 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 MCUQ8NE86 351 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 PPHLN1Q8NEY8 458 aaKnown RBP8.25□□□□□ -1.09
SF3A1-208ENST00000485618 C1orf216Q8TAB5 229 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 DTX3LQ8TDB6 740 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 PTCD2Q8WV60 388 aaKnown RBP8.25□□□□□ -1.09
SF3A1-208ENST00000485618 HEXDCQ8WVB3 486 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 SCG3Q8WXD2 468 aaKnown RBP8.25□□□□□ -1.09
SF3A1-208ENST00000485618 PEX13Q92968 403 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.25□□□□□ -1.09
SF3A1-208ENST00000485618 VOPP1Q96AW1 172 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 CENPTQ96BT3 561 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 SLC6A18Q96N87 628 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 PLEKHG4BQ96PX9 1271 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 KRT12Q99456 494 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 GTPBP2Q9BX10 602 aaKnown RBP8.25□□□□□ -1.09
SF3A1-208ENST00000485618 ZCCHC2Q9C0B9 1178 aaKnown RBP8.25□□□□□ -1.09
SF3A1-208ENST00000485618 IL22Q9GZX6 179 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 DDX47Q9H0S4 455 aaKnown RBP8.25□□□□□ -1.09
SF3A1-208ENST00000485618 WDR26Q9H7D7 661 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 TMEM74BQ9NUR3 256 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 EVA1BQ9NVM1 165 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 SHOC2Q9UQ13 582 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 ANKRD36A6QL64 1941 aa8.25□□□□□ -1.09
SF3A1-208ENST00000485618 PI4KAP42356 2102 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 CACNA1EQ15878 2313 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 A0A1B0GVT2 93 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 SDR42E2A6NKP2 422 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 C4orf47A7E2U8 309 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 C1QTNF9BB2RNN3 333 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 C10orf142B7Z368 130 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 GPR89AB7ZAQ6 455 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 TNFRSF10CO14798 259 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 GIPC1O14908 333 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 SLC4A1P02730 911 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 PCCBP05166 539 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 PROS1P07225 676 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 ATXN1LP0C7T5 689 aaKnown RBP8.24□□□□□ -1.09
SF3A1-208ENST00000485618 C1QTNF9P0C862 333 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 GPR89BP0CG08 455 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 ZNF883P0CG24 379 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 RALBP11234 206 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 ETS1P14921 441 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 ENGP17813 658 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 PAMP19021 973 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 LHCGRP22888 699 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 SPAM1P38567 509 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 ETV3P41162 512 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 NXPH1P58417 271 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 HNRNPKP61978 463 aaKnown RBP eCLIP8.24□□□□□ -1.09
SF3A1-208ENST00000485618 IRX4P78413 519 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 SEMG2Q02383 582 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 CAV1Q03135 178 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 ITGA9Q13797 1035 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 PDE1CQ14123 709 aaPredicted RBP8.24□□□□□ -1.09
SF3A1-208ENST00000485618 NFATC4Q14934 902 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 MORF4L2Q15014 288 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 IRF4Q15306 451 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 TRIP13Q15645 432 aaPredicted RBP8.24□□□□□ -1.09
SF3A1-208ENST00000485618 GLE1Q53GS7 698 aaKnown RBP8.24□□□□□ -1.09
SF3A1-208ENST00000485618 FAXCQ5TGI0 409 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 LYPLAL1Q5VWZ2 237 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 ESRP1Q6NXG1 681 aaKnown RBP8.24□□□□□ -1.09
SF3A1-208ENST00000485618 TTC27Q6P3X3 843 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 LRRC8BQ6P9F7 803 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 ADAMTSL4Q6UY14 1074 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 CEP128Q6ZU80 1094 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 HSD11B1LQ7Z5J1 315 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 TECPR1Q7Z6L1 1165 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 TSPAN33Q86UF1 283 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 HOOK3Q86VS8 718 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 SDR16C5Q8N3Y7 309 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 TAB3Q8N5C8 712 aaPredicted RBP8.24□□□□□ -1.09
SF3A1-208ENST00000485618 TRAM1L1Q8N609 369 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 TP53I13Q8NBR0 393 aaPredicted RBP8.24□□□□□ -1.09
SF3A1-208ENST00000485618 STYXQ8WUJ0 223 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 HIC2Q96JB3 615 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 NSMCE3Q96MG7 304 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 TTC25Q96NG3 672 aa8.24□□□□□ -1.09
SF3A1-208ENST00000485618 KLF6Q99612 283 aaPredicted RBP8.24□□□□□ -1.09
SF3A1-208ENST00000485618 MYOCQ99972 504 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms