RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 ZNF572Q7Z3I7 529 aaPredicted RBP16.88■□□□□ 0.29
SCAF11-206ENST00000474828 PRUNE1Q86TP1 453 aa16.88■□□□□ 0.29
SCAF11-206ENST00000474828 PARGQ86W56 976 aa16.88■□□□□ 0.29
SCAF11-206ENST00000474828 SLC25A41Q8N5S1 370 aa16.88■□□□□ 0.29
SCAF11-206ENST00000474828 SAP25Q8TEE9 199 aa16.88■□□□□ 0.29
SCAF11-206ENST00000474828 LRRC45Q96CN5 670 aa16.88■□□□□ 0.29
SCAF11-206ENST00000474828 SCARF2Q96GP6 870 aaPredicted RBP16.88■□□□□ 0.29
SCAF11-206ENST00000474828 COX14Q96I36 57 aa16.88■□□□□ 0.29
SCAF11-206ENST00000474828 RAB6BQ9NRW1 208 aa16.88■□□□□ 0.29
SCAF11-206ENST00000474828 CNOT6Q9ULM6 557 aaKnown RBP16.88■□□□□ 0.29
SCAF11-206ENST00000474828 PNMA8BQ9ULN7 279 aaPredicted RBP16.88■□□□□ 0.29
SCAF11-206ENST00000474828 ADAMTS9Q9P2N4 1935 aa16.88■□□□□ 0.29
SCAF11-206ENST00000474828 SCN8AQ9UQD0 1980 aa16.88■□□□□ 0.29
SCAF11-206ENST00000474828 CCDC188H7C350 402 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 MYCLP1P12525 358 aaPredicted RBP16.87■□□□□ 0.29
SCAF11-206ENST00000474828 BPIP17213 487 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 EPHA8P29322 1005 aaPredicted RBP16.87■□□□□ 0.29
SCAF11-206ENST00000474828 TNNT3P45378 269 aaPredicted RBP16.87■□□□□ 0.29
SCAF11-206ENST00000474828 CCT8P50990 548 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 ATXN3P54252 364 aaPredicted RBP16.87■□□□□ 0.29
SCAF11-206ENST00000474828 PDE1CQ14123 709 aaPredicted RBP16.87■□□□□ 0.29
SCAF11-206ENST00000474828 TAF1AQ15573 450 aaPredicted RBP16.87■□□□□ 0.29
SCAF11-206ENST00000474828 FAXCQ5TGI0 409 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 ZDHHC20Q5W0Z9 365 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 SYT10Q6XYQ8 523 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 PTAR1Q7Z6K3 402 aaPredicted RBP16.87■□□□□ 0.29
SCAF11-206ENST00000474828 GPR26Q8NDV2 337 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 OR2I1PQ8NGU4 316 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 SCAMP4Q969E2 229 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 AP2M1Q96CW1 435 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 GTPBP2Q9BX10 602 aaKnown RBP16.87■□□□□ 0.29
SCAF11-206ENST00000474828 GPR63Q9BZJ6 419 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 FAM83DQ9H4H8 585 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 CASS4Q9NQ75 786 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 TM7SF3Q9NS93 570 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.87■□□□□ 0.299e-6■■■■□ 19.7
SCAF11-206ENST00000474828 KLF15Q9UIH9 416 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 SHOC2Q9UQ13 582 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 DGKBQ9Y6T7 804 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 KNL1Q8NG31 2342 aa16.87■□□□□ 0.29
SCAF11-206ENST00000474828 TP53BP1Q12888 1972 aaPredicted RBP16.86■□□□□ 0.29
SCAF11-206ENST00000474828 LDB2O43679 373 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 USP12O75317 370 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 PCCBP05166 539 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 TPSB2P20231 275 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 CASQ1P31415 396 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 PTGIRP43119 386 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 ARRB1P49407 418 aaPredicted RBP16.86■□□□□ 0.29
SCAF11-206ENST00000474828 CDK3Q00526 305 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 SPARCL1Q14515 664 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 TPSAB1Q15661 275 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 ARMC3Q5W041 872 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 TRAM1L1Q8N609 369 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 BAHD1Q8TBE0 780 aaPredicted RBP16.86■□□□□ 0.29
SCAF11-206ENST00000474828 GRK7Q8WTQ7 553 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 AGAP2Q99490 1192 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 APOL2Q9BQE5 337 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 RTKNQ9BST9 563 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 RIOK2Q9BVS4 552 aaKnown RBP16.86■□□□□ 0.29
SCAF11-206ENST00000474828 LGR4Q9BXB1 951 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 FRMD8Q9BZ67 464 aaPredicted RBP16.86■□□□□ 0.29
SCAF11-206ENST00000474828 WDR26Q9H7D7 661 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 RIMKLBQ9ULI2 386 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 SLC17A4Q9Y2C5 497 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 OR1A2Q9Y585 309 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 TMEM131Q92545 1883 aa16.86■□□□□ 0.29
SCAF11-206ENST00000474828 TMEM202A6NGA9 273 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 MROH6A6NGR9 719 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 AGAP14A8MT82 685 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 FADS2P1A8MWK0 482 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 GAPDHSO14556 408 aaPredicted RBP16.85■□□□□ 0.29
SCAF11-206ENST00000474828 CBFA2T3O75081 653 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 KRT14P02533 472 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 GIMD1P0DJR0 217 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 CSRP1P21291 193 aaKnown RBP16.85■□□□□ 0.29
SCAF11-206ENST00000474828 KELP23276 732 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 ZNF140P52738 457 aaPredicted RBP16.85■□□□□ 0.29
SCAF11-206ENST00000474828 THOP1P52888 689 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 PDE1BQ01064 536 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 CDH17Q12864 832 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 KCNJ11Q14654 390 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 RSPO4Q2I0M5 234 aaPredicted RBP16.85■□□□□ 0.29
SCAF11-206ENST00000474828 DENND2CQ68D51 928 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 GSTA5Q7RTV2 222 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 DGLUCYQ7Z3D6 616 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 GLT6D1Q7Z4J2 308 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 HEATR4Q86WZ0 1026 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 WDR92Q96MX6 357 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 RUNDC3BQ96NL0 473 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 VPS35Q96QK1 796 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 RANBP9Q96S59 729 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 ZSCAN5AQ9BUG6 496 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 IL26Q9NPH9 171 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 CD84Q9UIB8 345 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 CSNK1G3Q9Y6M4 447 aa16.85■□□□□ 0.29
SCAF11-206ENST00000474828 H7C0S8 307 aa16.84■□□□□ 0.29
SCAF11-206ENST00000474828 CACNB4O00305 520 aaPredicted RBP16.84■□□□□ 0.29
SCAF11-206ENST00000474828 CRTAMO95727 393 aa16.84■□□□□ 0.29
SCAF11-206ENST00000474828 CEACAM5P06731 702 aa16.84■□□□□ 0.29
SCAF11-206ENST00000474828 APRTP07741 180 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms