RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, human

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKS1B-206	ENST00000474215	IMPACT	Q9P2X3	320 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	RAX	Q9Y2V3	346 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	PCDHA3	Q9Y5H8	950 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	AK5	Q9Y6K8	562 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	WDFY3	Q8IZQ1	3526 aa		11.15	□□□□□ -0.62
CKS1B-206	ENST00000474215	CACNA1B	Q00975	2339 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	RGSL1	A5PLK6	1076 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	CS	O75390	466 aa	Known RBP	11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	SOD1	P00441	154 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	PYGL	P06737	847 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	PTPN3	P26045	913 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	CTNNA1	P35221	906 aa	Known RBP	11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	POLD2	P49005	469 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	COPS2	P61201	443 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	CDK18	Q07002	472 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	WASHC5	Q12768	1159 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	ILF3	Q12906	894 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	SLC14A2	Q15849	920 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	PPP2R5E	Q16537	467 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	BBS12	Q6ZW61	710 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	ZC3H18	Q86VM9	953 aa	Known RBP	11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	KY	Q8NBH2	561 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	GPR156	Q8NFN8	814 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	OR6C4	Q8NGE1	309 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	SPATA22	Q8NHS9	363 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	CCL4L1	Q8NHW4	92 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	WDR48	Q8TAF3	677 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	CCHCR1	Q8TD31	782 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	GPBAR1	Q8TDU6	330 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	GRAMD1A	Q96CP6	724 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	HIC2	Q96JB3	615 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	AGAP2	Q99490	1192 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	CCDC3	Q9BQI4	270 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	DPEP2	Q9H4A9	486 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	FAM83D	Q9H4H8	585 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	MAGEE1	Q9HCI5	957 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	TRNAU1AP	Q9NX07	287 aa	Known RBP	11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	SLC17A4	Q9Y2C5	497 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	TMEM98	Q9Y2Y6	226 aa		11.14	□□□□□ -0.63
CKS1B-206	ENST00000474215	CCDC66	A2RUB6	948 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	HACD1	B0YJ81	288 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	PJA2	O43164	708 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	USP12	O75317	370 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	PMPCB	O75439	489 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	TCEA3	O75764	348 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	MT-CYB	P00156	380 aa	Predicted RBP	11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	IVL	P07476	585 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	CDC25B	P30305	580 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	GNPDA1	P46926	289 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	SPINT3	P49223	89 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	VAV2	P52735	878 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	GALNT3	Q14435	633 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	PCSK7	Q16549	785 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	ISX	Q2M1V0	245 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	CCDC70	Q6NSX1	233 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	RBM44	Q6ZP01	1051 aa	Known RBP	11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	KIAA1328	Q86T90	577 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	NRROS	Q86YC3	692 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	TMEM139	Q8IV31	216 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	ACRBP	Q8NEB7	543 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	PTCD2	Q8WV60	388 aa	Known RBP	11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	CCDC74A	Q96AQ1	378 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	SCARF2	Q96GP6	870 aa	Predicted RBP	11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	WDR24	Q96S15	920 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	VAT1	Q99536	393 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	GSDMC	Q9BYG8	508 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	ZFYVE1	Q9HBF4	777 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	SPATS2L	Q9NUQ6	558 aa	Known RBP	11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	PKD2L2	Q9NZM6	624 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	SUFU	Q9UMX1	484 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	EFR3B	Q9Y2G0	817 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	PCDHB1	Q9Y5F3	818 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	ANKRD11	Q6UB99	2663 aa	Predicted RBP	11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	ITPR1	Q14643	2758 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	CFAP47	Q6ZTR5	3102 aa		11.13	□□□□□ -0.63
CKS1B-206	ENST00000474215	NBEA	Q8NFP9	2946 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	GOLGA4	Q13439	2230 aa	Known RBP	11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	CHD6	Q8TD26	2715 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	APOC4-APOC2	K7ER74	178 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	INPP4B	O15327	924 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	NOBOX	O60393	691 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	BRINP1	O60477	761 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	NDST3	O95803	873 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	APOC2	P02655	101 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	FGF1	P05230	155 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	GLB1	P16278	677 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	CTNNA2	P26232	953 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	CD68	P34810	354 aa	Predicted RBP	11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	ADCY8	P40145	1251 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	LSS	P48449	732 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	RWDD2B	P57060	319 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	CTBS	Q01459	385 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	KIF5A	Q12840	1032 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	XRCC4	Q13426	336 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	PEX6	Q13608	980 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	C14orf28	Q4W4Y0	310 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	HENMT1	Q5T8I9	393 aa	Known RBP	11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	CCDC181	Q5TID7	509 aa		11.12	□□□□□ -0.63
CKS1B-206	ENST00000474215	DOK6	Q6PKX4	331 aa		11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms