RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PAIP1Q9H074 479 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 TAOK3Q9H2K8 898 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 C17orf75Q9HAS0 396 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 PREBQ9HCU5 417 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 MCM9Q9NXL9 1143 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 TBX20Q9UMR3 447 aa3.12□□□□□ -1.91
CCDC88A-212ENST00000474059 FAM90A7PA6NKC0 464 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 SH2D7A6NKC9 451 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 FAM90A22PA8MWA6 464 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 FAM90A12PA8MX19 464 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 FAM90A23PA8MXZ1 464 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 KLRF2D3W0D1 207 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 NDUFB4O95168 129 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 MBD4O95243 580 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 CD4P01730 458 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 ZNF8P17098 575 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 STX2P32856 288 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 PSMC2P35998 433 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 CLK1P49759 484 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 DRG2P55039 364 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 TBL3Q12788 808 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 SIM2Q14190 667 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 NFIL3Q16649 462 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 EDRF1Q3B7T1 1238 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 MMEL1Q495T6 779 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 FAM53AQ6NSI3 398 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 IL20RBQ6UXL0 311 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 KRBA2Q6ZNG9 492 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 MAATS1Q7Z4T9 603 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 CHD1LQ86WJ1 897 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 TSPYL6Q8N831 410 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 LSM14AQ8ND56 463 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 PPHLN1Q8NEY8 458 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 GJC3Q8NFK1 279 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 OR2AK2Q8NG84 335 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 GDPD5Q8WTR4 605 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 SKA1Q96BD8 255 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 ZBTB10Q96DT7 871 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 RNF125Q96EQ8 232 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 APOPT1Q96IL0 206 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 LMAN2LQ9H0V9 348 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 UNC45AQ9H3U1 944 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 TTC12Q9H892 705 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 JMJD4Q9H9V9 463 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 ZNF624Q9P2J8 865 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 ARHGAP26Q9UNA1 814 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 CYP46A1Q9Y6A2 500 aa3.11□□□□□ -1.91
CCDC88A-212ENST00000474059 CTAGE9A4FU28 777 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 BLOC1S5-TXNDC5H3BN57 136 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 ZNF821O75541 412 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 INHBAP08476 426 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 CTAGE8P0CG41 777 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 MYOD1P15172 320 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 GPTP24298 496 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 TMPOP42166 694 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 CASP6P55212 293 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 SEC61BP60468 96 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 YWHAZP63104 245 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 IRX1P78414 480 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 GALNT2Q10471 571 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 TDGQ13569 410 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 MAPRE1Q15691 268 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 GPR68Q15743 365 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 BAK1Q16611 211 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 ACAD10Q6JQN1 1059 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 C15orf39Q6ZRI6 1047 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 KCTD8Q6ZWB6 473 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 MTSS1LQ765P7 747 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 RSRC2Q7L4I2 434 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 LURAP1LQ8IV03 231 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 CTAGE4Q8IX94 777 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 CNBD1Q8NA66 436 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 RUFY2Q8WXA3 655 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 HSPH1Q92598 858 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 ZUFSPQ96AP4 578 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 ZNF689Q96CS4 500 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 ELP4Q96EB1 424 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 PCYT2Q99447 389 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 FUZQ9BT04 418 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 LRRC1Q9BTT6 524 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 ZHX3Q9H4I2 956 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 MROH8Q9H579 483 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 RPS10P5Q9NQ39 176 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 CISD1Q9NZ45 108 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 CNOT7Q9UIV1 285 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 PCDHGB5Q9Y5G0 923 aa3.1□□□□□ -1.91
CCDC88A-212ENST00000474059 B4E171 279 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 GUCY1B2O75343 617 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 EDN2P20800 178 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 ABCD3P28288 659 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 CHATP28329 748 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 GGT5P36269 586 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 EIF2S3P41091 472 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 TSPAN7P41732 249 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 GEMIN4P57678 1058 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 CLDN2P57739 230 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 RPP30P78346 268 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 ITGADQ13349 1161 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 NEDD9Q14511 834 aa3.09□□□□□ -1.91
CCDC88A-212ENST00000474059 NAA25Q14CX7 972 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms