RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 LRRC66Q68CR7 880 aa13.24□□□□□ -0.29
CPSF4-210ENST00000469897 MARK2Q7KZI7 788 aaKnown RBP13.24□□□□□ -0.29
CPSF4-210ENST00000469897 LRRC49Q8IUZ0 686 aa13.24□□□□□ -0.29
CPSF4-210ENST00000469897 SLITRK4Q8IW52 837 aa13.24□□□□□ -0.29
CPSF4-210ENST00000469897 FAM71BQ8TC56 605 aa13.24□□□□□ -0.29
CPSF4-210ENST00000469897 TMEM159Q96B96 161 aa13.24□□□□□ -0.29
CPSF4-210ENST00000469897 AP2M1Q96CW1 435 aa13.24□□□□□ -0.29
CPSF4-210ENST00000469897 AGAP2Q99490 1192 aa13.24□□□□□ -0.29
CPSF4-210ENST00000469897 RBM22Q9NW64 420 aaKnown RBP eCLIP13.24□□□□□ -0.295e-6■■■□□ 15.1
CPSF4-210ENST00000469897 RCOR3Q9P2K3 495 aaPredicted RBP13.24□□□□□ -0.29
CPSF4-210ENST00000469897 CHKBQ9Y259 395 aa13.24□□□□□ -0.29
CPSF4-210ENST00000469897 LUC7L2Q9Y383 392 aaKnown RBP13.24□□□□□ -0.29
CPSF4-210ENST00000469897 TDRD6O60522 2096 aaKnown RBP13.24□□□□□ -0.29
CPSF4-210ENST00000469897 CHD5Q8TDI0 1954 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 C9orf172C9J069 976 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 CPNE6O95741 557 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 SOD1P00441 154 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 IVLP07476 585 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 CCL4P13236 92 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 MPSTP25325 297 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 TEAD1P28347 426 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 CD1CP29017 333 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 GJC1P36383 396 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 EPHB1P54762 984 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 DSC2Q02487 901 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 GALNT2Q10471 571 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 DPYSL3Q14195 570 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 C16orf72Q14CZ0 275 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 PAFAH1B3Q15102 231 aaKnown RBP13.23□□□□□ -0.29
CPSF4-210ENST00000469897 MAP9Q49MG5 647 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 ANKRD20A8PQ5CZ79 823 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 NKAIN2Q5VXU1 208 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 NCBP2-AS2Q69YL0 99 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 TRIM74Q86UV6 250 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 NAGSQ8N159 534 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 RCBTB1Q8NDN9 531 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 SCARF2Q96GP6 870 aaPredicted RBP13.23□□□□□ -0.29
CPSF4-210ENST00000469897 NUDT22Q9BRQ3 303 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 POLR1EQ9GZS1 481 aaKnown RBP13.23□□□□□ -0.29
CPSF4-210ENST00000469897 FOXJ2Q9P0K8 574 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 ACSL6Q9UKU0 697 aa13.23□□□□□ -0.29
CPSF4-210ENST00000469897 FASNP49327 2511 aaKnown RBP13.23□□□□□ -0.29
CPSF4-210ENST00000469897 BPTFQ12830 3046 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 IGHV5-10-1A0A0J9YXX1 117 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 A0A0J9YYE9 177 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 INPP4BO15327 924 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 ZW10O43264 779 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 MFSD11O43934 449 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 CLDN7O95471 211 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 ASMTLO95671 621 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 PRLP01236 227 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 TRBC1P01850 177 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 LIPCP11150 499 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 CCNCP24863 283 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 ACTR1BP42025 376 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 TAS2R40P59535 323 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 ACTR1AP61163 376 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 NIPAL4Q0D2K0 466 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 IFI16Q16666 785 aaKnown RBP13.22□□□□□ -0.29
CPSF4-210ENST00000469897 PYCR3Q53H96 274 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 FAM182AQ5T1J6 154 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 ADAMTSL4Q6UY14 1074 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 NLRP8Q86W28 1048 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 ARRDC2Q8TBH0 407 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 MAML1Q92585 1016 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 MED8Q96G25 268 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 RIOK2Q9BVS4 552 aaKnown RBP13.22□□□□□ -0.29
CPSF4-210ENST00000469897 AKAP7Q9P0M2 348 aaPredicted RBP13.22□□□□□ -0.29
CPSF4-210ENST00000469897 IFNKQ9P0W0 207 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 CTTNBP2NLQ9P2B4 639 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 PRKAB1Q9Y478 270 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 TTLL3Q9Y4R7 772 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 PCDHB11Q9Y5F2 797 aa13.22□□□□□ -0.29
CPSF4-210ENST00000469897 B8ZZF3 427 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 PROSCO94903 275 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 GYPCP04921 128 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 CES1P23141 567 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 CASP14P31944 242 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 GPR3P46089 330 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 GBE1Q04446 702 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 SLC10A2Q12908 348 aaPredicted RBP13.21□□□□□ -0.29
CPSF4-210ENST00000469897 NR1D2Q14995 579 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 PDK2Q15119 407 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 LINC00303Q3SY05 128 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 MANEAQ5SRI9 462 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 TMEM164Q5U3C3 297 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 TIGD7Q6NT04 549 aaPredicted RBP13.21□□□□□ -0.29
CPSF4-210ENST00000469897 ZNF438Q7Z4V0 828 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 VASH2Q86V25 355 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 PQLC3Q8N755 202 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 EXD3Q8N9H8 876 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 CCNYQ8ND76 341 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 EXD1Q8NHP7 514 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 ZNF564Q8TBZ8 553 aaPredicted RBP13.21□□□□□ -0.29
CPSF4-210ENST00000469897 JPH3Q8WXH2 748 aaPredicted RBP13.21□□□□□ -0.29
CPSF4-210ENST00000469897 TSGA13Q96PP4 275 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 OR2M4Q96R27 311 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 PACSIN1Q9BY11 444 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 SEPT10Q9P0V9 454 aa13.21□□□□□ -0.29
CPSF4-210ENST00000469897 ZNHIT2Q9UHR6 403 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms