RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 CCDC15Q0P6D6 951 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 CUL4AQ13619 759 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 NFATC4Q14934 902 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 INPP5JQ15735 1006 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-209ENST00000469511 NFIL3Q16649 462 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 EDRF1Q3B7T1 1238 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 ZNF805Q5CZA5 627 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 HP1BP3Q5SSJ5 553 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-209ENST00000469511 TCERG1LQ5VWI1 586 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 CPZQ66K79 652 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 TMEM110Q86TL2 294 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 TTC7BQ86TV6 843 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 C17orf82Q86X59 251 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-209ENST00000469511 ZSWIM9Q86XI8 627 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 FAM129CQ86XR2 697 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 IRF2BP1Q8IU81 584 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 NLGN4XQ8N0W4 816 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 RYBPQ8N488 228 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-209ENST00000469511 TTC39CQ8N584 583 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 PCDH20Q8N6Y1 951 aaKnown RBP5.3□□□□□ -1.56
PTPN4-209ENST00000469511 GOLM1Q8NBJ4 401 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 NLGN4YQ8NFZ3 816 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-209ENST00000469511 LMO3Q8TAP4 145 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 GPBAR1Q8TDU6 330 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 GATAD2BQ8WXI9 593 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 PPP1R16AQ96I34 528 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 FAXDC2Q96IV6 333 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 EAF1Q96JC9 268 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-209ENST00000469511 KREMEN1Q96MU8 473 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 WDR92Q96MX6 357 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 RANBP9Q96S59 729 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 B3GNT4Q9C0J1 378 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 SCAND2PQ9GZW5 306 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-209ENST00000469511 KLC2Q9H0B6 622 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 AKIRIN1Q9H9L7 192 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-209ENST00000469511 CBX8Q9HC52 389 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 CYP4F12Q9HCS2 524 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 ATP13A1Q9HD20 1204 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 PIGVQ9NUD9 493 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 KLQ9UEF7 1012 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.3□□□□□ -1.56
PTPN4-209ENST00000469511 SPG11Q96JI7 2443 aa5.3□□□□□ -1.56
PTPN4-209ENST00000469511 DOCK10Q96BY6 2186 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 CNTRLQ7Z7A1 2325 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 IGHV1OR21-1A0A087WYE8 117 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 LOC100289279A0A1B0GTE1 492 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 A0A1B0GVL5 298 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 HGSO14964 777 aaPredicted RBP5.29□□□□□ -1.56
PTPN4-209ENST00000469511 NUDT21O43809 227 aaKnown RBP5.29□□□□□ -1.56
PTPN4-209ENST00000469511 SRGAP2O75044 1071 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 STK17BO94768 372 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 PIGNO95427 931 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 EML2O95834 649 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 DDAH2O95865 285 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 DLGAP3O95886 979 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 F13A1P00488 732 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 OR1E1P30953 314 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 HNRNPH3P31942 346 aaKnown RBP5.29□□□□□ -1.56
PTPN4-209ENST00000469511 CCR1P32246 355 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 PEX5P50542 639 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 BLKP51451 505 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 CDK17Q00537 523 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 MYLK3Q32MK0 819 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 TMEM52BQ4KMG9 183 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 DCAF17Q5H9S7 520 aaPredicted RBP5.29□□□□□ -1.56
PTPN4-209ENST00000469511 DCAF12Q5T6F0 453 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 RESP18Q5W5W9 173 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 TRNP1Q6NT89 227 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 BNC2Q6ZN30 1099 aaPredicted RBP5.29□□□□□ -1.56
PTPN4-209ENST00000469511 FAM183BPQ6ZVS7 135 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 BEND5Q7L4P6 421 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 KDELC2Q7Z4H8 507 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 PHLDB2Q86SQ0 1253 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 ZC3H18Q86VM9 953 aaKnown RBP5.29□□□□□ -1.56
PTPN4-209ENST00000469511 TP53INP2Q8IXH6 220 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 DRC7Q8IY82 874 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 NAGSQ8N159 534 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 PPM1KQ8N3J5 372 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 AGBL5Q8NDL9 886 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 OR6C4Q8NGE1 309 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 CXorf40AQ8TE69 158 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 SLC35C1Q96A29 364 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 RAB7BQ96AH8 199 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 SEC16BQ96JE7 1060 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 CCDC114Q96M63 670 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 NSMCE3Q96MG7 304 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 SLC2A13Q96QE2 648 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 CPXM1Q96SM3 734 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 DDA1Q9BW61 102 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 SRRTQ9BXP5 876 aaKnown RBP5.29□□□□□ -1.56
PTPN4-209ENST00000469511 DNAI2Q9GZS0 605 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 TKTL2Q9H0I9 626 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 THAP9Q9H5L6 903 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 ARHGEF38Q9NXL2 777 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 NOP53Q9NZM5 478 aaKnown RBP5.29□□□□□ -1.56
PTPN4-209ENST00000469511 RCOR3Q9P2K3 495 aaPredicted RBP5.29□□□□□ -1.56
PTPN4-209ENST00000469511 SLC12A6Q9UHW9 1150 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 MOSPD1Q9UJG1 213 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 ITGB1BP2Q9UKP3 347 aa5.29□□□□□ -1.56
PTPN4-209ENST00000469511 KIAA1257Q9ULG3 409 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms