RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TSC22D3Q99576 134 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 GALPQ9UBC7 116 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 FNDC3AQ9Y2H6 1198 aaKnown RBP8.92□□□□□ -0.98
SYNE1-217ENST00000466159 PCDHGC4Q9Y5F7 938 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 PRSS51A0A1B0GVH4 220 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 TBKBP1A7MCY6 615 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 H7C4K7 107 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 ARVCFO00192 962 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 CBX4O00257 560 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 MRASO14807 208 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 PIP5K1BO14986 540 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 TRIM24O15164 1050 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 INSIG1O15503 277 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 COCHO43405 550 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 KDELR3O43731 214 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 NRP2O60462 931 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 TSPAN3O60637 253 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 DNAJA2O60884 412 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 CLASP2O75122 1294 aaKnown RBP8.92□□□□□ -0.98
SYNE1-217ENST00000466159 RNASEH2AO75792 299 aaKnown RBP8.92□□□□□ -0.98
SYNE1-217ENST00000466159 SRP72O76094 671 aaKnown RBP8.92□□□□□ -0.98
SYNE1-217ENST00000466159 CRTAMO95727 393 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 GFAPP14136 432 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 SLC11A2P49281 568 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 CDH4P55283 916 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 GRB7Q14451 532 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 RARS2Q5T160 578 aaKnown RBP8.92□□□□□ -0.98
SYNE1-217ENST00000466159 IL23RQ5VWK5 629 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 ISLR2Q6UXK2 745 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 C16orf59Q7L2K0 433 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 BBS5Q8N3I7 341 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 CD99L2Q8TCZ2 262 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 DLG3Q92796 817 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 GBP5Q96PP8 586 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 BTBD9Q96Q07 612 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 TTLL2Q9BWV7 592 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 TUBB1Q9H4B7 451 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 TFB2MQ9H5Q4 396 aaKnown RBP8.92□□□□□ -0.98
SYNE1-217ENST00000466159 COMMD8Q9NX08 183 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 GMPR2Q9P2T1 348 aaKnown RBP8.92□□□□□ -0.98
SYNE1-217ENST00000466159 PCDHGB4Q9UN71 923 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 PCDHGB5Q9Y5G0 923 aa8.92□□□□□ -0.98
SYNE1-217ENST00000466159 GBF1Q92538 1859 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 LAMA2P24043 3122 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 EME2A4GXA9 379 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 ZNF840PA6NDX5 716 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SUPT3HB4E1H0 165 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 C9JVG2 144 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SCAMP3O14828 347 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 AZIN1O14977 448 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SUPT3HO75486 399 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 FGF4P08620 206 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 IRF1P10914 325 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 HOXB8P17481 243 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 CR2P20023 1033 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 GPX3P22352 226 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 OR1D2P34982 312 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 PSMD8P48556 350 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 ECT2LQ008S8 904 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SMARCB1Q12824 385 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 CYTH1Q15438 398 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 TSNQ15631 228 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 KIF19Q2TAC6 998 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 PITRM1Q5JRX3 1037 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 UGT2A3Q6UWM9 527 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 RAB44Q7Z6P3 723 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 GALNT4Q8N4A0 578 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 LPCAT1Q8NF37 534 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 RHEBL1Q8TAI7 183 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 RAET1EQ8TD07 263 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 TWIST2Q8WVJ9 160 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 LPGAT1Q92604 370 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 WBP2Q969T9 261 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 LRCH3Q96II8 777 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 GPR21Q99679 349 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SLC30A3Q99726 388 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 TSEN34Q9BSV6 310 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SLC25A23Q9BV35 468 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 POPDC3Q9HBV1 291 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 BPIFA1Q9NP55 256 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SPAG4Q9NPE6 437 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SEMA4BQ9NPR2 832 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SCUBE2Q9NQ36 999 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SPATS2LQ9NUQ6 558 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 INTS10Q9NVR2 710 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SARDHQ9UL12 918 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 RIMKLBQ9ULI2 386 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 BTRCQ9Y297 605 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 AK5Q9Y6K8 562 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 NCF1BA6NI72 391 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 NCF1CA8MVU1 366 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 CDC7O00311 574 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 OR1I1O60431 355 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 NDUFS3O75489 264 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 STC2O76061 302 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 RHOCP08134 193 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 LINC00032P0C843 101 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 NCF1P14598 390 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 EEF1DP29692 281 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 CORO1AP31146 461 aaKnown RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms