RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 NUDT5Q9UKK9 219 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 E2F8A0AVK6 867 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 WDR27A2RRH5 827 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 SCAMP3O14828 347 aaKnown RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 PHGDHO43175 533 aaKnown RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 NBNO60934 754 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 BANF1O75531 89 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 RHOBTB1O94844 696 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 OR4Q2P0C623 313 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 MYL2P10916 166 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 CCNB1P14635 433 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 MGAT1P26572 445 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 HALP42357 657 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 RAD23AP54725 363 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 CSE1LP55060 971 aaKnown RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 MLLT6P55198 1093 aaPredicted RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 PITX1P78337 314 aaPredicted RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 SLC18A2Q05940 514 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 KCTD19Q17RG1 926 aaPredicted RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 ITPRIPL2Q3MIP1 535 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 LIN52Q52LA3 116 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 PPP4R4Q6NUP7 873 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 KYAT3Q6YP21 454 aaKnown RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 C11orf74Q86VG3 221 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 DCLK2Q8N568 766 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 BANPQ8N9N5 519 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 SCAMP5Q8TAC9 235 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 KLHL5Q96PQ7 755 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TBL1YQ9BQ87 522 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 SLC2A11Q9BYW1 496 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 A0A1W2PPC1 479 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 HEATR9A2RTY3 570 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 LSM1O15116 133 aaKnown RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 KPNA5O15131 536 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 MPOP05164 745 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 DPP6P42658 865 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 CCR3P51677 355 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 ARMC4Q5T2S8 1044 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 PDPK2PQ6A1A2 396 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 BHLHA9Q7RTU4 235 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 SCAIQ8N9R8 606 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 GPR152Q8TDT2 470 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 SLC22A17Q8WUG5 538 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TMEM209Q96SK2 561 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TMEM79Q9BSE2 394 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 SARS2Q9NP81 518 aaKnown RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 CASS4Q9NQ75 786 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 MKL2Q9ULH7 1088 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 RPS6KL1Q9Y6S9 549 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TSC2P49815 1807 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 MEI4A8MW99 385 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 PMPCBO75439 489 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 ITGB1P05556 798 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 HLA-DPA1P20036 260 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 GCAP28676 217 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 SERPINH1P50454 418 aaKnown RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 NUDT2P50583 147 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TP53BP2Q13625 1128 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 CHI3L2Q15782 390 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 KCTD21Q4G0X4 260 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 PCID2Q5JVF3 399 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 POTEHQ6S545 545 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 GIPC3Q8TF64 312 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 COX4I2Q96KJ9 171 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 AGAP3Q96P47 875 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 RBBP8Q99708 897 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 TMEM120AQ9BXJ8 343 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 WDR12Q9GZL7 423 aaKnown RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 ILKAPQ9H0C8 392 aaPredicted RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 MRM3Q9HC36 420 aaKnown RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 GLOD4Q9HC38 313 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 KLHL20Q9Y2M5 609 aa7.66□□□□□ -1.18
USP54-210ENST00000466048 MRPL42Q9Y6G3 142 aaKnown RBP7.66□□□□□ -1.18
USP54-210ENST00000466048 PDZK1P1A8MUH7 402 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 H0YC42 278 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 KCNK1O00180 336 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 IFRD1O00458 451 aaPredicted RBP7.65□□□□□ -1.18
USP54-210ENST00000466048 IDH3BO43837 385 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 MYO1DO94832 1006 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 GNSP15586 552 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 NFKB1P19838 968 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 CPA2P48052 419 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 NUMBP49757 651 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 RABGGTBP53611 331 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 AP1S1P61966 158 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 PCSK7Q16549 785 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 INSCQ1MX18 579 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 ZRANB3Q5FWF4 1079 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 RALGPS1Q5JS13 557 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 SCD5Q86SK9 330 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 SH3RF2Q8TEC5 729 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 RASSF5Q8WWW0 418 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 PANX3Q96QZ0 392 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 EGFL8Q99944 293 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 CLPBQ9H078 707 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 TMEM248Q9NWD8 314 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 DNAJB4Q9UDY4 337 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 NDRG2Q9UN36 371 aaKnown RBP7.65□□□□□ -1.18
USP54-210ENST00000466048 ANKRD6Q9Y2G4 727 aa7.65□□□□□ -1.18
USP54-210ENST00000466048 FAM92AA1XBS5 289 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms