RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 PAK5Q9P286 719 aa18.59■□□□□ 0.57
PTCD3-204ENST00000418628 FEZ2Q9UHY8 353 aaPredicted RBP18.59■□□□□ 0.57
PTCD3-204ENST00000418628 CD84Q9UIB8 345 aa18.59■□□□□ 0.57
PTCD3-204ENST00000418628 SHOC2Q9UQ13 582 aa18.59■□□□□ 0.57
PTCD3-204ENST00000418628 NEU2Q9Y3R4 380 aa18.59■□□□□ 0.57
PTCD3-204ENST00000418628 GOLGA6CA6NDK9 693 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 GOLGA6BA6NDN3 693 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 PIAS2O75928 621 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 SUN1O94901 812 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 IFNB1P01574 187 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 PYGLP06737 847 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 GOLGA6DP0CG33 693 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 GIMD1P0DJR0 217 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 RPL22P35268 128 aaKnown RBP18.58■□□□□ 0.56
PTCD3-204ENST00000418628 ID4P47928 161 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 THOP1P52888 689 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 CDK3Q00526 305 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 IL9RQ01113 521 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 KCTD16Q68DU8 428 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 NYAP1Q6ZVC0 841 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 HEATR4Q86WZ0 1026 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 CREG2Q8IUH2 290 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 NAXDQ8IW45 347 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 DTX3LQ8TDB6 740 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 COX14Q96I36 57 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 WDR92Q96MX6 357 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 AGAP2Q99490 1192 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 LGR4Q9BXB1 951 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 ETNK1Q9HBU6 452 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 GOLGA6AQ9NYA3 693 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.58■□□□□ 0.56
PTCD3-204ENST00000418628 IL17CQ9P0M4 197 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 BTBD3Q9Y2F9 522 aa18.58■□□□□ 0.56
PTCD3-204ENST00000418628 GOLGA8CPA6NN73 597 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 FADS2P1A8MWK0 482 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 PHF2O75151 1096 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 USP12O75317 370 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 ZSCAN5DPP0CG00 497 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 BPIP17213 487 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 BNIP3Q12983 259 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 ALG11Q2TAA5 492 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 RAET1GQ6H3X3 334 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 PDCD7Q8N8D1 485 aaKnown RBP18.57■□□□□ 0.56
PTCD3-204ENST00000418628 CCDC89Q8N998 374 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 GPR26Q8NDV2 337 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 PDXPQ96GD0 296 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 PLEKHG4BQ96PX9 1271 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 C19orf43Q9BQ61 176 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 APOL2Q9BQE5 337 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 RIOK2Q9BVS4 552 aaKnown RBP18.57■□□□□ 0.56
PTCD3-204ENST00000418628 AP1M1Q9BXS5 423 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 FRMD8Q9BZ67 464 aaPredicted RBP18.57■□□□□ 0.56
PTCD3-204ENST00000418628 GPR63Q9BZJ6 419 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 FGF22Q9HCT0 170 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 PCOLCE2Q9UKZ9 415 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 CNOT6Q9ULM6 557 aaKnown RBP18.57■□□□□ 0.56
PTCD3-204ENST00000418628 DGKBQ9Y6T7 804 aa18.57■□□□□ 0.56
PTCD3-204ENST00000418628 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 CTAGE9A4FU28 777 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 TMEM202A6NGA9 273 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 CACNB4O00305 520 aaPredicted RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 GAPDHSO14556 408 aaPredicted RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 TNFRSF10CO14798 259 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 PSMD3O43242 534 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 COILP38432 576 aaPredicted RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 TNNT3P45378 269 aaPredicted RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 FNTAP49354 379 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 HNRNPKP61978 463 aaKnown RBP eCLIP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 ETF1P62495 437 aaKnown RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 SPARCL1Q14515 664 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 HS1BP3Q53T59 392 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 C4orf22Q6V702 233 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 GLT6D1Q7Z4J2 308 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 GATAD2AQ86YP4 633 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 PHACTR4Q8IZ21 702 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 SLC25A45Q8N413 288 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 ZNF548Q8NEK5 533 aaPredicted RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 ATL2Q8NHH9 583 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 BLOC1S5Q8TDH9 187 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 SCARF2Q96GP6 870 aaPredicted RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 LRRC61Q9BV99 259 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 TCEAL2Q9H3H9 227 aaPredicted RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 FAM83DQ9H4H8 585 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 EIF2B3Q9NR50 452 aaKnown RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 PHPT1Q9NRX4 125 aaPredicted RBP18.56■□□□□ 0.56
PTCD3-204ENST00000418628 RAD18Q9NS91 495 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 DNAJC28Q9NX36 388 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 SLC17A4Q9Y2C5 497 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 SAR1BQ9Y6B6 198 aa18.56■□□□□ 0.56
PTCD3-204ENST00000418628 SPEGQ15772 3267 aa18.55■□□□□ 0.56
PTCD3-204ENST00000418628 SH3BP5O60239 455 aa18.55■□□□□ 0.56
PTCD3-204ENST00000418628 DGKAP23743 735 aa18.55■□□□□ 0.56
PTCD3-204ENST00000418628 HTR1BP28222 390 aa18.55■□□□□ 0.56
PTCD3-204ENST00000418628 ACTN2P35609 894 aa18.55■□□□□ 0.56
PTCD3-204ENST00000418628 GRK6P43250 576 aa18.55■□□□□ 0.56
PTCD3-204ENST00000418628 MAGEA6P43360 314 aa18.55■□□□□ 0.56
PTCD3-204ENST00000418628 GPR1P46091 355 aa18.55■□□□□ 0.56
PTCD3-204ENST00000418628 ZNF140P52738 457 aaPredicted RBP18.55■□□□□ 0.56
PTCD3-204ENST00000418628 HK3P52790 923 aa18.55■□□□□ 0.56
PTCD3-204ENST00000418628 SUZ12Q15022 739 aaKnown RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms