RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 BRAT1Q6PJG6 821 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 SLC30A9Q6PML9 568 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 DPPA4Q7L190 304 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 C17orf82Q86X59 251 aaPredicted RBP12.9□□□□□ -0.34
LINC00339-202ENST00000416769 SLC35G2Q8TBE7 412 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 NKD1Q969G9 470 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 TRIM44Q96DX7 344 aaPredicted RBP12.9□□□□□ -0.34
LINC00339-202ENST00000416769 CALR3Q96L12 384 aaKnown RBP12.9□□□□□ -0.34
LINC00339-202ENST00000416769 KCTD15Q96SI1 283 aaPredicted RBP12.9□□□□□ -0.34
LINC00339-202ENST00000416769 CMKLR1Q99788 373 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 TRIM7Q9C029 511 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 EPN3Q9H201 632 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 RETREG1Q9H6L5 497 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 WDR26Q9H7D7 661 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 TMEM51Q9NW97 253 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 TAAR2Q9P1P5 351 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 PPP2R2CQ9Y2T4 447 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 B3GALT1Q9Y5Z6 326 aa12.9□□□□□ -0.34
LINC00339-202ENST00000416769 RCCD1A6NED2 376 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 TMEM191CA6NGB0 347 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 TMX2-CTNND1H3BSU7 103 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 PPM1DO15297 605 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 ZSCAN12O43309 604 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 NUDT21O43809 227 aaKnown RBP12.89□□□□□ -0.35
LINC00339-202ENST00000416769 DUX1O43812 170 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 PALMO75781 387 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 MTA2O94776 668 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 CEACAM5P06731 702 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 LHCGRP22888 699 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 TRIM23P36406 574 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 GNPDA1P46926 289 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 HADHBP55084 474 aaKnown RBP12.89□□□□□ -0.35
LINC00339-202ENST00000416769 DCUN1D2Q6PH85 259 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 DOK6Q6PKX4 331 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 CYP4V2Q6ZWL3 525 aaPredicted RBP12.89□□□□□ -0.35
LINC00339-202ENST00000416769 ZNF438Q7Z4V0 828 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 HSD11B1LQ7Z5J1 315 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 TRIM74Q86UV6 250 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 HEATR4Q86WZ0 1026 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 NAGSQ8N159 534 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 GPBAR1Q8TDU6 330 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 ZDHHC1Q8WTX9 485 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 COQ10AQ96MF6 247 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 ZNF641Q96N77 438 aaPredicted RBP12.89□□□□□ -0.35
LINC00339-202ENST00000416769 NUP85Q9BW27 656 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 TSGA10Q9BZW7 698 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 LACRTQ9GZZ8 138 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 CATSPERBQ9H7T0 1116 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 OCIAD1Q9NX40 245 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 SEPT10Q9P0V9 454 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 CTTNBP2NLQ9P2B4 639 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 LCMT1Q9UIC8 334 aa12.89□□□□□ -0.35
LINC00339-202ENST00000416769 PCYT1BQ9Y5K3 369 aaPredicted RBP12.89□□□□□ -0.35
LINC00339-202ENST00000416769 SPTAN1Q13813 2472 aaKnown RBP12.88□□□□□ -0.35
LINC00339-202ENST00000416769 TRBV23OR9-2A0A075B6M9 112 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 DFFAO00273 331 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 KRT86O43790 486 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 CPNE6O95741 557 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 EML2O95834 649 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 CCNB1P14635 433 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 PNLIPP16233 465 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 SERPINA4P29622 427 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 UGT1A3P35503 534 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 ETV3P41162 512 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 ARHGAP25P42331 645 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 SCNN1BP51168 640 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 SUOXP51687 545 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 SLC10A7Q0GE19 358 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 ATP1A1-AS1Q5TC04 95 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 TSPAN33Q86UF1 283 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 PIM3Q86V86 326 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 UNC5BQ8IZJ1 945 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 PGBD5Q8N414 524 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 RNF10Q8N5U6 811 aaKnown RBP12.88□□□□□ -0.35
LINC00339-202ENST00000416769 OR6C4Q8NGE1 309 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 ATL2Q8NHH9 583 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 ZNF564Q8TBZ8 553 aaPredicted RBP12.88□□□□□ -0.35
LINC00339-202ENST00000416769 HCAR2Q8TDS4 363 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 ART4Q93070 314 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 NUS1Q96E22 293 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 TUBGCP5Q96RT8 1024 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 SNRNP25Q9BV90 132 aaKnown RBP12.88□□□□□ -0.35
LINC00339-202ENST00000416769 CINPQ9BW66 212 aaPredicted RBP12.88□□□□□ -0.35
LINC00339-202ENST00000416769 SLC25A18Q9H1K4 315 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 DHX35Q9H5Z1 703 aaKnown RBP12.88□□□□□ -0.35
LINC00339-202ENST00000416769 ATP13A3Q9H7F0 1226 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 GEMIN8Q9NWZ8 242 aaKnown RBP12.88□□□□□ -0.35
LINC00339-202ENST00000416769 PCSK1NQ9UHG2 260 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 PYCARDQ9ULZ3 195 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 SUFUQ9UMX1 484 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 TFR2Q9UP52 801 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 AP4E1Q9UPM8 1137 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 PCDHGC4Q9Y5F7 938 aa12.88□□□□□ -0.35
LINC00339-202ENST00000416769 USP9XQ93008 2570 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-202ENST00000416769 NPIPB15A6NHN6 443 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-202ENST00000416769 RHPN2P1A8MT19 583 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-202ENST00000416769 MYO1FO00160 1098 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 HAX1O00165 279 aa12.87□□□□□ -0.35
LINC00339-202ENST00000416769 EEF2KO00418 725 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms