RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TDRD10Q5VZ19 366 aaKnown RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 GPR180Q86V85 440 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 TEX51A0A1B0GUA7 166 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 MAPK3P27361 379 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 SLC26A2P50443 739 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 NAGLUP54802 743 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 NFE2L1Q14494 772 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 IQSEC1Q6DN90 963 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 CYP20A1Q6UW02 462 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 BEND5Q7L4P6 421 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 PCDH20Q8N6Y1 951 aaKnown RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF512Q96ME7 567 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 ADGRE2Q9UHX3 823 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 PNPLA6Q8IY17 1366 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 LIASO43766 372 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 APBA3O96018 575 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 RAP2AP10114 183 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 GRIA2P42262 883 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 RGS7P49802 495 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 FADDQ13158 208 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 PFKFB4Q16877 469 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 METTL8Q9H825 291 aaKnown RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 MTMR4Q9NYA4 1195 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 ROBO3Q96MS0 1386 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 ACOX3O15254 700 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 GRB14Q14449 540 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 RAB12Q6IQ22 244 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 DLGAP1O14490 977 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 SLC9A3R1O14745 358 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 USP12O75317 370 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 IPO13O94829 963 aaKnown RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 CD79BP40259 229 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 POU6F1Q14863 301 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 AGMOQ6ZNB7 445 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 CENPSQ8N2Z9 138 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 PCDH19Q8TAB3 1148 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF431Q8TF32 576 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 LENG9Q96B70 501 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 CPNE2Q96FN4 548 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 IFT27Q9BW83 186 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 ETNK2Q9NVF9 386 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 PCDHGA4Q9Y5G9 962 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 OAS3Q9Y6K5 1087 aaKnown RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 BTN3A1O00481 513 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 GABBR2O75899 941 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 CCR1P32246 355 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 NEPROQ6NW34 567 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 TMC8Q8IU68 726 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 EBNA1BP2Q99848 306 aaKnown RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 COPS4Q9BT78 406 aa12.87□□□□□ -0.35
COL6A3-206ENST00000409809 TLR8Q9NR97 1041 aaKnown RBP12.87□□□□□ -0.35
COL6A3-206ENST00000409809 IQSEC2Q5JU85 1478 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 MSH4O15457 936 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 PRKACAP17612 351 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 TIGD6Q17RP2 521 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 CDCA5Q96FF9 252 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 SMARCD1Q96GM5 515 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 OR52E6Q96RD3 313 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF334Q9HCZ1 680 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 CLTCQ00610 1675 aaKnown RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 HGFP14210 728 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 Q3C1V9 767 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 RABL3Q5HYI8 236 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 AHSA2Q719I0 299 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ECHDC2Q86YB7 292 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 SDR16C5Q8N3Y7 309 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 SLC5A5Q92911 643 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 RIOK2Q9BVS4 552 aaKnown RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 RHOJQ9H4E5 214 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 EBF3Q9H4W6 596 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 TMEM260Q9NX78 707 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ELOVL7A1L3X0 281 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 SHBGP04278 402 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ANXA5P08758 320 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 DNAJB1P25685 340 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 CDH5P33151 784 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF410Q86VK4 478 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 PSTKQ8IV42 348 aaKnown RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 IFT46Q9NQC8 304 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 RAB19A4D1S5 217 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 F5H6K3 240 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 SRPRAP08240 638 aaKnown RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 RGS6P49758 472 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 CAPZA1P52907 286 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 KLRC3Q07444 240 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 TPRG1LQ5T0D9 272 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 GPR158Q5T848 1215 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 C16orf86Q6ZW13 317 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 TRUB1Q8WWH5 349 aaKnown RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 MSANTD3Q96H12 275 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 PCDHGB2Q9Y5G2 931 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 H7C4K7 107 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 RFXANKO14593 260 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 GRID2O43424 1007 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 TIPRLO75663 272 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 SGPL1O95470 568 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 CFL1P23528 166 aaKnown RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 FSHRP23945 695 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 PTPN5P54829 565 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 TAS2R41P59536 307 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms