RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 RNASEH1O60930 286 aaKnown RBP9.22□□□□□ -0.93
VPS53-203ENST00000401468 ANXA9O76027 345 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 PGLSO95336 258 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 AP2A1O95782 977 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 GAS8O95995 478 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 MT-CYBP00156 380 aaPredicted RBP9.22□□□□□ -0.93
VPS53-203ENST00000401468 KRT14P02533 472 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 ZSCAN5DPP0CG00 497 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 ETS1P14921 441 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 TPSB2P20231 275 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 GKP32189 559 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 HOXD12P35452 270 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 CD86P42081 329 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 GEMP55040 296 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 SHC2P98077 582 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 CDK16Q00536 496 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 DR1Q01658 176 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 BCL2L1Q07817 233 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 CNTN1Q12860 1018 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 MSLNQ13421 630 aaPredicted RBP9.22□□□□□ -0.93
VPS53-203ENST00000401468 KCNJ11Q14654 390 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 TPSAB1Q15661 275 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 FAM182AQ5T1J6 154 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 AGBL4Q5VU57 503 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 RANBP10Q6VN20 620 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 ARHGEF18Q6ZSZ5 1173 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 PARS2Q7L3T8 475 aaKnown RBP9.22□□□□□ -0.93
VPS53-203ENST00000401468 ZSWIM9Q86XI8 627 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 JAMLQ86YT9 394 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 CAMK1DQ8IU85 385 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 SVOPQ8N4V2 548 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 CCDC89Q8N998 374 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 CADM4Q8NFZ8 388 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 OR6K2Q8NGY2 324 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 SPATA22Q8NHS9 363 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 GRIN3AQ8TCU5 1115 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 PIH1D2Q8WWB5 315 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 ZCCHC14Q8WYQ9 949 aaKnown RBP9.22□□□□□ -0.93
VPS53-203ENST00000401468 GATA6Q92908 595 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 ARRDC3Q96B67 414 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 PPP1R16AQ96I34 528 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 LYSMD1Q96S90 227 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 RBM15Q96T37 977 aaKnown RBP eCLIP9.22□□□□□ -0.93
VPS53-203ENST00000401468 KRT12Q99456 494 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 ZDHHC6Q9H6R6 413 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 RSPH14Q9UHP6 348 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 NCKAP1Q9Y2A7 1128 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 RAI2Q9Y5P3 530 aa9.22□□□□□ -0.93
VPS53-203ENST00000401468 URB1O60287 2271 aaKnown RBP9.21□□□□□ -0.93
VPS53-203ENST00000401468 TBC1D3DA0A087WVF3 549 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 TBC1D3IA0A087WXS9 549 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 TBC1D3EA0A087X179 549 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 TBC1D3KA0A087X1G2 549 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 CTAGE15A4D2H0 777 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 TBC1D3FA6NER0 549 aaPredicted RBP9.21□□□□□ -0.94
VPS53-203ENST00000401468 C16orf96A6NNT2 1141 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 TBC1D3LB9A6J9 549 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 RAD51CO43502 376 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 SDC3O75056 442 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 PIGNO95427 931 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 IFNB1P01574 187 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 UGT2B4P06133 528 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 PDHA1P08559 390 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 TBC1D3HP0C7X1 549 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 CTAGE8P0CG41 777 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 MYF5P13349 255 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 ADRB3P13945 408 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 CA4P22748 312 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 GRIA4P48058 902 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 RNF144AP50876 292 aaPredicted RBP9.21□□□□□ -0.94
VPS53-203ENST00000401468 AFF3P51826 1226 aaKnown RBP9.21□□□□□ -0.94
VPS53-203ENST00000401468 ADPRHP54922 357 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 DRG2P55039 364 aaKnown RBP9.21□□□□□ -0.94
VPS53-203ENST00000401468 WNT3AP56704 352 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 TAS2R38P59533 333 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 POLR2LP62875 67 aaKnown RBP9.21□□□□□ -0.94
VPS53-203ENST00000401468 C2orf54Q08AI8 447 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 DNAJC3Q13217 504 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 SLC1A5Q15758 541 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 UGP2Q16851 508 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 GLE1Q53GS7 698 aaKnown RBP9.21□□□□□ -0.94
VPS53-203ENST00000401468 LRRC73Q5JTD7 316 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 ARMC3Q5W041 872 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 TBC1D3GQ6DHY5 549 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 TBC1D3CQ6IPX1 549 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 DENND5AQ6IQ26 1287 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 GSTA5Q7RTV2 222 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 MAATS1Q7Z4T9 603 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 PRUNE1Q86TP1 453 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 CTAGE6Q86UF2 777 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 CTAGE4Q8IX94 777 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 KLHL7Q8IXQ5 586 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 RAVER1Q8IY67 606 aaKnown RBP9.21□□□□□ -0.94
VPS53-203ENST00000401468 TBC1D3Q8IZP1 549 aaPredicted RBP9.21□□□□□ -0.94
VPS53-203ENST00000401468 CBARPQ8N350 705 aaPredicted RBP9.21□□□□□ -0.94
VPS53-203ENST00000401468 NOA1Q8NC60 698 aaKnown RBP9.21□□□□□ -0.94
VPS53-203ENST00000401468 RHBDD1Q8TEB9 315 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 RAB7BQ96AH8 199 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 SERAC1Q96JX3 654 aa9.21□□□□□ -0.94
VPS53-203ENST00000401468 KLHL32Q96NJ5 620 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms