RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 LRRC55Q6ZSA7 311 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 GPR180Q86V85 440 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 TSPAN18Q96SJ8 248 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 GPR25O00155 361 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 B4GALT4O60513 344 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 CENPIQ92674 756 aaPredicted RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 PPP3R2Q96LZ3 170 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 CORO2BQ9UQ03 480 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 MED1Q15648 1581 aaPredicted RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 LYPLA1O75608 230 aaPredicted RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 HOXC12P31275 282 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 PGDP52209 483 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 XKR4Q5GH76 650 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 RASGRP3Q8IV61 690 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 MSL3Q8N5Y2 521 aaKnown RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 AIF1LQ9BQI0 150 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 GDF3Q9NR23 364 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 SPATA2Q9UM82 520 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 CLUHO75153 1309 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 ALADP13716 330 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 NRIP1P48552 1158 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 CDH4P55283 916 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 RAB14P61106 215 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 KPNB1Q14974 876 aaKnown RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 NDUFA9Q16795 377 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 PTPN20Q4JDL3 420 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 CLP1Q92989 425 aaKnown RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 KIFC1Q9BW19 673 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 PRKCGP05129 697 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 FAM58BPP0C7Q3 252 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 BMP7P18075 431 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 CASP9P55211 416 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 ARHGAP36Q6ZRI8 547 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 ADHFE1Q8IWW8 467 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 TTC29Q8NA56 475 aaPredicted RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 C19orf60Q96EN9 201 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 ERVK-11Q9UQG0 969 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 MAFBQ9Y5Q3 323 aaPredicted RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 H3BQF6 201 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 RPP40O75818 363 aaKnown RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 FSHRP23945 695 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 SLC6A2P23975 617 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 ATP5F1P24539 256 aaPredicted RBP11.33□□□□□ -0.6
TTC28-201ENST00000397906 SLC44A4Q53GD3 710 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 PPP1R15BQ5SWA1 713 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 SCAMP5Q8TAC9 235 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 ATG10Q9H0Y0 220 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 DCLRE1BQ9H816 532 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 KLRC4O43908 158 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 PMF1Q6P1K2 205 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 CYB5D2Q8WUJ1 264 aa11.33□□□□□ -0.6
TTC28-201ENST00000397906 MT-CYBP00156 380 aaPredicted RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 MAPKAPK2P49137 400 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 LSM12Q3MHD2 195 aaKnown RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 TXNDC11Q6PKC3 985 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 ZNF366Q8N895 744 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 C1orf127Q8N9H9 656 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 CSPG4P5Q96PW8 444 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 MRTO4Q9UKD2 239 aaKnown RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 ZNF214Q9UL59 606 aaPredicted RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 SLC13A2Q13183 592 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 ZDHHC20Q5W0Z9 365 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 DQX1Q8TE96 717 aaKnown RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 CNOT6Q9ULM6 557 aaKnown RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 ROBO1Q9Y6N7 1651 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 EFCAB10A6NFE3 127 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 CMPK1P30085 196 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 MRPS35P82673 323 aaKnown RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 TMPRSS6Q8IU80 811 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 SPATA22Q8NHS9 363 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 GLOD4Q9HC38 313 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 EOMESO95936 686 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 GNA12Q03113 381 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 TRMT5Q32P41 509 aaKnown RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 PROSER1Q86XN7 944 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 CADM2Q8N3J6 435 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 SVOPQ8N4V2 548 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 SETD7Q8WTS6 366 aaKnown RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 RORBQ92753 470 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 RMND5BQ96G75 393 aaPredicted RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 ACBD6Q9BR61 282 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 SIKE1Q9BRV8 207 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 ACE2Q9BYF1 805 aaPredicted RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 FPGTO14772 594 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 NDUFAF6Q330K2 333 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 ZNF607Q96SK3 696 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 DCUN1D5Q9BTE7 237 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 RPS6KA6Q9UK32 745 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 FBXO5Q9UKT4 447 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 PSMD11O00231 422 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 TPP2P29144 1249 aaPredicted RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 CDC42P60953 191 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 USP4Q13107 963 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 HOMEZQ8IX15 550 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 DDHD1Q8NEL9 900 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 SH3RF2Q8TEC5 729 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 BRI3BPQ8WY22 251 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 SLC38A2Q96QD8 506 aa11.32□□□□□ -0.6
TTC28-201ENST00000397906 MRPS26Q9BYN8 205 aaKnown RBP11.32□□□□□ -0.6
TTC28-201ENST00000397906 A0A1B0GVM2 712 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms