RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 GNRHRP30968 328 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 PRELPP51888 382 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 MFSD10Q14728 455 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 NR1D2Q14995 579 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 WDR72Q3MJ13 1102 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 ACSM3Q53FZ2 586 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 HSD17B12Q53GQ0 312 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 ATF7IP2Q5U623 682 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 RABEPKQ7Z6M1 372 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 ECHDC2Q86YB7 292 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 RDH11Q8TC12 318 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 POF1BQ8WVV4 589 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 MS4A14Q96JA4 679 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 CDRT15Q96T59 188 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 DPYSL5Q9BPU6 564 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 MCMBPQ9BTE3 642 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 LACRTQ9GZZ8 138 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 CD248Q9HCU0 757 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 LIMD1Q9UGP4 676 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 MRPS23Q9Y3D9 190 aaKnown RBP4.64□□□□□ -1.67
SCN1A-202ENST00000375405 IGSF9BQ9UPX0 1349 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 RAD51BO15315 384 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 RNMTO43148 476 aaKnown RBP4.64□□□□□ -1.67
SCN1A-202ENST00000375405 EOMESO95936 686 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 NDUFB10O96000 172 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 HEXAP06865 529 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 EPHA3P29320 983 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 ACADVLP49748 655 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 SNU13P55769 128 aaKnown RBP4.64□□□□□ -1.67
SCN1A-202ENST00000375405 TAP1Q03518 808 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF155Q12901 538 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-202ENST00000375405 NEDD8Q15843 81 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 RNASEH2BQ5TBB1 312 aaKnown RBP4.64□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF773Q6PK81 442 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 METTL3Q86U44 580 aaKnown RBP4.64□□□□□ -1.67
SCN1A-202ENST00000375405 KIRREL3Q8IZU9 778 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 ESX1Q8N693 406 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 NAT16Q8N8M0 369 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 FNDC5Q8NAU1 212 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 SDSLQ96GA7 329 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 SORCS2Q96PQ0 1159 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 RSAD1Q9HA92 442 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 LGR6Q9HBX8 967 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 NT5MQ9NPB1 228 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 KCNH7Q9NS40 1196 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 TMEM100Q9NV29 134 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 IMP3Q9NV31 184 aaKnown RBP4.64□□□□□ -1.67
SCN1A-202ENST00000375405 TMLHEQ9NVH6 421 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF358Q9NW07 568 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 PI4KBQ9UBF8 816 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 SNX24Q9Y343 169 aa4.64□□□□□ -1.67
SCN1A-202ENST00000375405 A0A0U1RQJ8 604 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SLC12A8A0AV02 714 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 IPO13O94829 963 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 NDUFA10O95299 355 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PLA2G4BP0C869 781 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CBSLP0DN79 551 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PRPH2P23942 346 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 EPHB2P29323 1055 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CDH5P33151 784 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CBSP35520 551 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CYP4F8P98187 520 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF45Q02386 682 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SPP2Q13103 211 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 UBE2UQ5VVX9 321 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SEL1L3Q68CR1 1132 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 HIPK1Q86Z02 1210 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 C10orf107Q8IVU9 208 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CCDC116Q8IYX3 515 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TMEM130Q8N3G9 435 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SLC44A1Q8WWI5 657 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 DGCR6LQ9BY27 220 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CLN6Q9NWW5 311 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TPRP12270 2363 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 MYO3BQ8WXR4 1341 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 MYH14Q7Z406 1995 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 A0A087WUU8 490 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CCL15-CCL14A0A0B4J2E2 113 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 WDPCPO95876 746 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CD4P01730 458 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 C9P02748 559 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 TP53P04637 393 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 PKMP14618 531 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SLC9A3P48764 834 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF136P52737 540 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CDH8P55286 799 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 HSPA14Q0VDF9 509 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 QPRTQ15274 297 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CCL15Q16663 113 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF697Q5TEC3 545 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 MCATQ8IVS2 390 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 KBTBD2Q8IY47 623 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 SH2D3CQ8N5H7 860 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 GPR156Q8NFN8 814 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 C11orf24Q96F05 449 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 FUBP3Q96I24 572 aaKnown RBP eCLIP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 GFM1Q96RP9 751 aaKnown RBP4.63□□□□□ -1.67
SCN1A-202ENST00000375405 CORO1BQ9BR76 489 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 LXNQ9BS40 222 aa4.63□□□□□ -1.67
SCN1A-202ENST00000375405 MINDY3Q9H8M7 445 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms