RNA–Protein interactions for RNA: ENST00000374198.4

PRPF4-201, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PRPF4, Length 2,787 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-201ENST00000374198 ZNF544Q6NX49 715 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 TUBA3EQ6PEY2 450 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 PRSS48Q7RTY5 328 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 GRPEL2Q8TAA5 225 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 FAR1Q8WVX9 515 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 OMDQ99983 421 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 KCTD14Q9BQ13 255 aaPredicted RBP12.9□□□□□ -0.34
PRPF4-201ENST00000374198 OSBPL2Q9H1P3 480 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 RPAP3Q9H6T3 665 aaPredicted RBP12.9□□□□□ -0.34
PRPF4-201ENST00000374198 NGRNQ9NPE2 291 aaKnown RBP12.9□□□□□ -0.34
PRPF4-201ENST00000374198 PDLIM7Q9NR12 457 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 FKBP14Q9NWM8 211 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 COL20A1Q9P218 1284 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 KCNN3Q9UGI6 736 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 BOLA1Q9Y3E2 137 aa12.9□□□□□ -0.34
PRPF4-201ENST00000374198 ZCWPW2A0A1B0GU75 182 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 PDZK1P1A8MUH7 402 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 ERVH48-1M5A8F1 160 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 GRAP2O75791 330 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 RRM2P31350 389 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 HADHAP40939 763 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 TPD52P55327 224 aaPredicted RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 YBX1P67809 324 aaKnown RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 CCNA1P78396 465 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 EMX1Q04741 257 aaPredicted RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 TOP3AQ13472 1001 aaPredicted RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 TNFAIP1Q13829 316 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 DUSP7Q16829 419 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 CTU2Q2VPK5 515 aaKnown RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 CCDC14Q49A88 953 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 PYCR3Q53H96 274 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 BRMS1LQ5PSV4 323 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 TTC23Q5W5X9 447 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 HHIPL2Q6UWX4 724 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 P2RY8Q86VZ1 359 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 GATAD2AQ86YP4 633 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 CCDC28AQ8IWP9 274 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 AFAP1L2Q8N4X5 818 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 PROX1Q92786 737 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 ZDHHC15Q96MV8 337 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 ZNF300Q96RE9 604 aaPredicted RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 MRIQ9BWK5 157 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 CCDC90BQ9GZT6 254 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 MIR1-1HGQ9H1L0 117 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 SLA2Q9H6Q3 261 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 ANKHQ9HCJ1 492 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 NDUFAF1Q9Y375 327 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 CEP350Q5VT06 3117 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 PTGES3LE9PB15 166 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 FXYD1O00168 92 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 DGAT1O75907 488 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 SOAT2O75908 522 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 SLC35E2BP0CK96 405 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 AGXTP21549 392 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 SLC6A2P23975 617 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 IL12AP29459 219 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 SFNP31947 248 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 ATP4BP51164 291 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 NCS1P62166 190 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 ORC1Q13415 861 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 POU6F1Q14863 301 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 GDPD3Q7L5L3 318 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 TMEM135Q86UB9 458 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 WDR49Q8IV35 697 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 CENPLQ8N0S6 344 aaPredicted RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 CELF2-AS1Q8N7Q2 184 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 FAM83FQ8NEG4 500 aaPredicted RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 MCFD2Q8NI22 146 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 JPH3Q8WXH2 748 aaPredicted RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 YIPF6Q96EC8 236 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 AURKBQ96GD4 344 aaPredicted RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 TBCBQ99426 244 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 GPR22Q99680 433 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 TARS2Q9BW92 718 aaKnown RBP12.89□□□□□ -0.35
PRPF4-201ENST00000374198 TRIM39Q9HCM9 518 aa12.89□□□□□ -0.35
PRPF4-201ENST00000374198 ZNF487B1APH4 448 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 NR5A2O00482 541 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 TMCC2O75069 709 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 MICAL2O94851 1124 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 GH2P01242 217 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 GPX3P22352 226 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 ACVR2AP27037 513 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 YWHAQP27348 245 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 AVPR1AP37288 418 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 CACNB3P54284 484 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 KRR1Q13601 381 aaKnown RBP12.88□□□□□ -0.35
PRPF4-201ENST00000374198 USP10Q14694 798 aaKnown RBP12.88□□□□□ -0.35
PRPF4-201ENST00000374198 LAIR2Q6ISS4 152 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 LYPD8Q6UX82 237 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 GET4Q7L5D6 327 aaPredicted RBP12.88□□□□□ -0.35
PRPF4-201ENST00000374198 SLC51BQ86UW2 128 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 CDR2LQ86X02 465 aaPredicted RBP12.88□□□□□ -0.35
PRPF4-201ENST00000374198 CLEC4FQ8N1N0 589 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 METTL4Q8N3J2 472 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 TXNDC5Q8NBS9 432 aaKnown RBP12.88□□□□□ -0.35
PRPF4-201ENST00000374198 DNERQ8NFT8 737 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 TTC9Q92623 222 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 SDCCAG3Q96C92 435 aa12.88□□□□□ -0.35
PRPF4-201ENST00000374198 PIWIL1Q96J94 861 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms