RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 CLDN7O95471 211 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 RPLP0P05388 317 aaKnown RBP21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 PYGLP06737 847 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 IVLP07476 585 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 PNLIPP16233 465 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 COMTP21964 271 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 CD86P42081 329 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 MAGEA1P43355 309 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 GNPDA1P46926 289 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 POLD2P49005 469 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 PCBP4P57723 403 aaKnown RBP21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 AP1B1Q10567 949 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 ILF3Q12906 894 aaKnown RBP eCLIP21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 HLTFQ14527 1009 aaKnown RBP eCLIP21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 NPNTQ6UXI9 565 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 RFX6Q8HWS3 928 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 ZNF248Q8NDW4 579 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 WDR36Q8NI36 951 aaKnown RBP21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 KIAA1524Q8TCG1 905 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 SCARF2Q96GP6 870 aaPredicted RBP21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 PRR11Q96HE9 360 aaPredicted RBP21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 SLC46A1Q96NT5 459 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 LRRN3Q9H3W5 708 aa21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 SPATS2LQ9NUQ6 558 aaKnown RBP21.62■■□□□ 1.05
CCDC28B-201ENST00000373602 ANKRD66B4E2M5 251 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 D6RAR5 112 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 SPOPO43791 374 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 TNNT1P13805 278 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 HADHBP55084 474 aaKnown RBP21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 CCDC173Q0VFZ6 552 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 QPCTQ16769 361 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 ODF2Q5BJF6 829 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 MFSD7Q6UXD7 560 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 C17orf82Q86X59 251 aaPredicted RBP21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 CCNJLQ8IV13 435 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 AGAP2Q99490 1192 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 BRD8Q9H0E9 1235 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 SUDS3Q9H7L9 328 aaPredicted RBP21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 THSD1Q9NS62 852 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 RNF215Q9Y6U7 377 aa21.61■■□□□ 1.05
CCDC28B-201ENST00000373602 CCDC187A0A096LP49 1063 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 PPP1R12AO14974 1030 aaPredicted RBP21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 NUDT21O43809 227 aaKnown RBP21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 LCA5LO95447 670 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 HOXB3P14651 431 aaPredicted RBP21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 AK4P27144 223 aaPredicted RBP21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 RBMS1P29558 406 aaKnown RBP21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 TAZQ16635 292 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 DOK6Q6PKX4 331 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 B3GNT8Q7Z7M8 397 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 SPACA3Q8IXA5 215 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 LIN37Q96GY3 246 aaPredicted RBP21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 COX14Q96I36 57 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 MLPHQ9BV36 600 aaPredicted RBP21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 RIOK2Q9BVS4 552 aaKnown RBP21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 PRORYQ9H606 182 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 TAAR2Q9P1P5 351 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 LRIT1Q9P2V4 623 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 ST14Q9Y5Y6 855 aa21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 ARHGEF17Q96PE2 2063 aaPredicted RBP21.6■■□□□ 1.05
CCDC28B-201ENST00000373602 C1orf232A0A0U1RR37 186 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 PMS2P1A4D2B8 440 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 TMX2-CTNND1H3BSU7 103 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 PSTPIP1O43586 416 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 FGF1P05230 155 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 ADCY8P40145 1251 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 MLLT3P42568 568 aaPredicted RBP21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 CDKN2BP42772 138 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 NOP2P46087 812 aaKnown RBP21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 CTBSQ01459 385 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 TLE3Q04726 772 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 FAM182AQ5T1J6 154 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 SPRED1Q7Z699 444 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 NT5DC3Q86UY8 548 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 Q8N9G6 341 aaPredicted RBP21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 EXD1Q8NHP7 514 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 ZDHHC1Q8WTX9 485 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 IMP4Q96G21 291 aaKnown RBP21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 WDR24Q96S15 920 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 ADGRE3Q9BY15 652 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 CEP41Q9BYV8 373 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 TMEM98Q9Y2Y6 226 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 ALG6Q9Y672 507 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 KIF26BQ2KJY2 2108 aa21.59■■□□□ 1.05
CCDC28B-201ENST00000373602 CCKBRP32239 447 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 NR2C2P49116 596 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 SPINT3P49223 89 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 DYNLT1P63172 113 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 EIF3IQ13347 325 aaKnown RBP21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 TFDP2Q14188 446 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 SOWAHCQ53LP3 525 aaPredicted RBP21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 SLC30A9Q6PML9 568 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 TRIM74Q86UV6 250 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 CCDC170Q8IYT3 715 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 TADA1Q96BN2 335 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 TMEM74Q96NL1 305 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 AGAP3Q96P47 875 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 OR2M4Q96R27 311 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 TRIB3Q96RU7 358 aa21.58■■□□□ 1.05
CCDC28B-201ENST00000373602 CDH19Q9H159 772 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms