RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 GJD3Q8N144 294 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 HDDC3Q8N4P3 179 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 OTUD6BQ8N6M0 293 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 GPR26Q8NDV2 337 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 RAB7BQ96AH8 199 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 MCMBPQ9BTE3 642 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 CATSPERZQ9NTU4 200 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 FADS3Q9Y5Q0 445 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 HMX2A2RU54 273 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 AHSGP02765 367 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 SERPINB9P50453 376 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 SEMA3AQ14563 771 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 CRY1Q16526 586 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 GRTP1Q5TC63 336 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 MRNIPQ6NTE8 343 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 FAM151BQ6UXP7 276 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.84■□□□□ 0.77
CLN3-205ENST00000359984 LDB1Q86U70 411 aaPredicted RBP19.84■□□□□ 0.77
CLN3-205ENST00000359984 LMNTD2Q8IXW0 634 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 GABPB2Q8TAK5 448 aaPredicted RBP19.84■□□□□ 0.77
CLN3-205ENST00000359984 MZB1Q8WU39 189 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 TLCD1Q96CP7 247 aa19.84■□□□□ 0.77
CLN3-205ENST00000359984 WRAP53Q9BUR4 548 aaKnown RBP19.84■□□□□ 0.77
CLN3-205ENST00000359984 IQANK1A0A1B0GTG1 560 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 CHURC1-FNTBB4DL54 471 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 DNTTP04053 509 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 ELFN1P0C7U0 828 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 C7P10643 843 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 SPAM1P38567 509 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 ABCG1P45844 678 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 LIG3P49916 1009 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 CDKN1CP49918 316 aaPredicted RBP19.83■□□□□ 0.76
CLN3-205ENST00000359984 CSE1LP55060 971 aaKnown RBP19.83■□□□□ 0.76
CLN3-205ENST00000359984 TAS2R38P59533 333 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 TMEM52BQ4KMG9 183 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 FASTKD1Q53R41 847 aaKnown RBP19.83■□□□□ 0.76
CLN3-205ENST00000359984 KIAA0408Q6ZU52 694 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 PIANPQ8IYJ0 282 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 NELL2Q99435 816 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 RBBP8Q99708 897 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 FAM96AQ9H5X1 160 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 PKD2L2Q9NZM6 624 aa19.83■□□□□ 0.76
CLN3-205ENST00000359984 HMGB1P1B2RPK0 211 aaPredicted RBP19.82■□□□□ 0.76
CLN3-205ENST00000359984 H0Y858 1186 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 NEMP1O14524 444 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 SRP72O76094 671 aaKnown RBP19.82■□□□□ 0.76
CLN3-205ENST00000359984 SNRPAP09012 282 aaKnown RBP19.82■□□□□ 0.76
CLN3-205ENST00000359984 PTPN5P54829 565 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 BMPR2Q13873 1038 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 GAS6Q14393 721 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 ZRANB3Q5FWF4 1079 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 ZNF789Q5FWF6 425 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 LGSNQ5TDP6 509 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 MROH9Q5TGP6 573 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 Q6ZVL8 140 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 FLCNQ8NFG4 579 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 SIPA1Q96FS4 1042 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 MRGPRX1Q96LB2 322 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 OMDQ99983 421 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 STMN4Q9H169 189 aaPredicted RBP19.82■□□□□ 0.76
CLN3-205ENST00000359984 TBC1D17Q9HA65 648 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 FBXO6Q9NRD1 293 aaPredicted RBP19.82■□□□□ 0.76
CLN3-205ENST00000359984 FBXL12Q9NXK8 326 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 APPL1Q9UKG1 709 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 SLC30A1Q9Y6M5 507 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 SCN8AQ9UQD0 1980 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 GLYATL1P3A0A0U1RQE8 302 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 TCRBV21S2A2A0A5A6 115 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 GPR39O43194 453 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 RNASEH2AO75792 299 aaKnown RBP19.82■□□□□ 0.76
CLN3-205ENST00000359984 KRT37O76014 449 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 KRT38O76015 456 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 HAUS5O94927 633 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 PRAMEF1O95521 474 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 S1PR4O95977 384 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 ITGA2BP08514 1039 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 GM2AP17900 193 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 KRT15P19012 456 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 OGNP20774 298 aaKnown RBP19.82■□□□□ 0.76
CLN3-205ENST00000359984 SPRP35270 261 aaPredicted RBP19.82■□□□□ 0.76
CLN3-205ENST00000359984 ETV3P41162 512 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 CACNG1Q06432 222 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 CHRNA6Q15825 494 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 PSAPL1Q6NUJ1 521 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 TECPR1Q7Z6L1 1165 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 SDCCAG8Q86SQ7 713 aaPredicted RBP19.82■□□□□ 0.76
CLN3-205ENST00000359984 ZC3HC1Q86WB0 502 aaKnown RBP19.82■□□□□ 0.76
CLN3-205ENST00000359984 GANCQ8TET4 914 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 ATXN7L3BQ96GX2 97 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 PLEKHG4BQ96PX9 1271 aa19.82■□□□□ 0.76
CLN3-205ENST00000359984 A0A1W2PPM1 405 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 TRIM49D1C9J1S8 452 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 PSMD11O00231 422 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 AP1G1O43747 822 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 MMP20O60882 483 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 NDUFV2P19404 249 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 CNTFP26441 200 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 ATP5DP30049 168 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 LEPRP48357 1165 aaKnown RBP19.81■□□□□ 0.76
CLN3-205ENST00000359984 LIMK2P53671 638 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms