RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 LRRC66Q68CR7 880 aa9.18□□□□□ -0.94
UPF2-202ENST00000357604 FBXO36Q8NEA4 188 aa9.18□□□□□ -0.94
UPF2-202ENST00000357604 OR2M4Q96R27 311 aa9.18□□□□□ -0.94
UPF2-202ENST00000357604 CDC6Q99741 560 aa9.18□□□□□ -0.94
UPF2-202ENST00000357604 CARS2Q9HA77 564 aaKnown RBP9.18□□□□□ -0.94
UPF2-202ENST00000357604 ABCF3Q9NUQ8 709 aa9.18□□□□□ -0.94
UPF2-202ENST00000357604 NMRK1Q9NWW6 199 aa9.18□□□□□ -0.94
UPF2-202ENST00000357604 APOBEC2Q9Y235 224 aaKnown RBP9.18□□□□□ -0.94
UPF2-202ENST00000357604 A0A0J9YYE9 177 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 FAM237BA0A1B0GVD1 139 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 FAM86C2PA6NEL3 165 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 ANKRD66B4E2M5 251 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 WASH3PC4AMC7 463 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 ZBTB14O43829 449 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 TRBC1P01850 177 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 KLKB1P03952 638 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 LINC00271P0C7V0 271 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 ITGB6P18564 788 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 HOXD12P35452 270 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 FAM83EQ2M2I3 478 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 NKAPQ8N5F7 415 aaKnown RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 ASZ1Q8WWH4 475 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 PEX13Q92968 403 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 IMP4Q96G21 291 aaKnown RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 RANBP9Q96S59 729 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 EBNA1BP2Q99848 306 aaKnown RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 INTS10Q9NVR2 710 aaKnown RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 CTNNAL1Q9UBT7 734 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 EBF1Q9UH73 591 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 PRAMEF1O95521 474 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 THEGLP0DJG4 465 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 PRKCHP24723 683 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 CTSOP43234 321 aaPredicted RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 KCNJ1P48048 391 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 MARCKSL1P49006 195 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 CNTN1Q12860 1018 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 SEMA5AQ13591 1074 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 PDE1CQ14123 709 aaPredicted RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 ITIH4Q14624 930 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 SDR16C5Q8N3Y7 309 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 ZCCHC9Q8N567 271 aaKnown RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 NEUROG2Q9H2A3 272 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 ZDHHC3Q9NYG2 299 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 DNMT3AQ9Y6K1 912 aaPredicted RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 A0A088AWK7 358 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 FYNP06241 537 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 ZNF10P21506 573 aaPredicted RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 CXCR2P25025 360 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 TYK2P29597 1187 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 PIK3CGP48736 1102 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 COL19A1Q14993 1142 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 ADCK2Q7Z695 626 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 PARGQ86W56 976 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 SOHLH2Q9NX45 425 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 POLG2Q9UHN1 485 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 GOLGA8KD6RF30 607 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 COPEO14579 308 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 RASGRF2O14827 1237 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 AGTP01019 485 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 CISD3P0C7P0 127 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 BMP1P13497 986 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 C6P13671 934 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 STMN1P16949 149 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 FCARP24071 287 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 NSG1P42857 185 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 TSTD2Q5T7W7 516 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 CRTC3Q6UUV7 619 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 PRR23CQ6ZRP0 262 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 EFL1Q7Z2Z2 1120 aaKnown RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 TMEM139Q8IV31 216 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 MAML1Q92585 1016 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 KLK6Q92876 244 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 SENP1Q9P0U3 644 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 PSMC3IPQ9P2W1 217 aaPredicted RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 SAE1Q9UBE0 346 aaPredicted RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 B4GALT6Q9UBX8 382 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 CD84Q9UIB8 345 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 SLCO3A1Q9UIG8 710 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 TDRKHQ9Y2W6 561 aaKnown RBP9.17□□□□□ -0.94
UPF2-202ENST00000357604 MFHAS1Q9Y4C4 1052 aa9.17□□□□□ -0.94
UPF2-202ENST00000357604 FNDC1Q4ZHG4 1894 aaPredicted RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 RCCD1A6NED2 376 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 HGSO14964 777 aaPredicted RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 KCNC3Q14003 757 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 BOP1Q14137 746 aaKnown RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 RCN2Q14257 317 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 SLC1A5Q15758 541 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 SIRPB2Q5JXA9 342 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 TTC29Q8NA56 475 aaPredicted RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 CCDC126Q96EE4 140 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 VPS11Q9H270 941 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 NMRAL1Q9HBL8 299 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 WWOXQ9NZC7 414 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 SUPT3HB4E1H0 165 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 RAD51BO15315 384 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 PRPF4O43172 522 aaKnown RBP eCLIP9.16□□□□□ -0.94
UPF2-202ENST00000357604 SUPT3HO75486 399 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 USP1O94782 785 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 MYCLP1P12525 358 aaPredicted RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 PEX5P50542 639 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms