RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 NADKO95544 446 aaPredicted RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 MYL3P08590 195 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 THRBP10828 461 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 CES1P23141 567 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 CD40LGP29965 261 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 PIGAP37287 484 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 SULT1E1P49888 294 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 STAT5BP51692 787 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ECT2LQ008S8 904 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 LIPEQ05469 1076 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 MBTD1Q05BQ5 628 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 SNX17Q15036 470 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 FAM209AQ5JX71 171 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 C6orf141Q5SZD1 244 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ESRP1Q6NXG1 681 aaKnown RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 STRADAQ7RTN6 431 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 AKAP14Q86UN6 197 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 GALNT13Q8IUC8 556 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ZDHHC17Q8IUH5 632 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 PHYKPLQ8IUZ5 450 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 RIMKLAQ8IXN7 391 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 DEFB106AQ8N104 65 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 PIK3C3Q8NEB9 887 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 OR6Q1Q8NGQ2 317 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 LILRB4Q8NHJ6 448 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 DNAJB14Q8TBM8 379 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 BIRC7Q96CA5 298 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ZNF486Q96H40 463 aaPredicted RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 TMEM74Q96NL1 305 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 TSPAN18Q96SJ8 248 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 CEP44Q9C0F1 390 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 CXCL16Q9H2A7 254 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 TOR3AQ9H497 397 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 EML4Q9HC35 981 aaKnown RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 MRM3Q9HC36 420 aaKnown RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 MAGEE1Q9HCI5 957 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 NSMCE4AQ9NXX6 385 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 DSEQ9UL01 958 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ZNF214Q9UL59 606 aaPredicted RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 TNFSF13BQ9Y275 285 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 A0A0G2JMZ2 1700 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 LRRC37A2A6NM11 1700 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 SCN1AP35498 2009 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 RLFQ13129 1914 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 H3BMM5 538 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 SPNP16150 400 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ITIH1P19827 911 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 FSHRP23945 695 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 MZF1P28698 734 aaPredicted RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 KCNC1P48547 511 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ALDH3A2P51648 485 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 LSM3P62310 102 aaKnown RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 CD47Q08722 323 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 CDC20Q12834 499 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 DAG1Q14118 895 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 MXD4Q14582 209 aaPredicted RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 HIST2H2ACQ16777 129 aaPredicted RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 ZNF789Q5FWF6 425 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 PRR23BQ6ZRT6 265 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 OTOP3Q7RTS5 596 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ARMC8Q8IUR7 673 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 KIAA2013Q8IYS2 634 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 AFAP1L2Q8N4X5 818 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 LEMD2Q8NC56 503 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 OSCP1Q8WVF1 389 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 HTRA1Q92743 480 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 TMBIM1Q969X1 311 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS39-202ENST00000348544 VPS33AQ96AX1 596 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 CLIP3Q96DZ5 547 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 RNF145Q96MT1 663 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ZMAT2Q96NC0 199 aaKnown RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 MBOAT4Q96T53 435 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 KCTD14Q9BQ13 255 aaPredicted RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 AMBRA1Q9C0C7 1298 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 TRIT1Q9H3H1 467 aaKnown RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 PIF1Q9H611 641 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 NOL6Q9H6R4 1146 aaKnown RBP6.78□□□□□ -1.32
VPS39-202ENST00000348544 HPS4Q9NQG7 708 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 SLAMF8Q9P0V8 285 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 ZNF229Q9UJW7 825 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 PDE10AQ9Y233 779 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 NAALAD2Q9Y3Q0 740 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 PCDHGA3Q9Y5H0 932 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 DNAJC15Q9Y5T4 150 aa6.78□□□□□ -1.32
VPS39-202ENST00000348544 A0A087X1B8 175 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 IGKV6-21A0A0C4DH24 114 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 A0A1W2PQ67 120 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 ERI2A8K979 691 aaKnown RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 EIF3FO00303 357 aaPredicted RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 EEF2KO00418 725 aaKnown RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 NDUFS2O75306 463 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 PRSS23O95084 383 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 CHEK2O96017 543 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 S100BP04271 92 aaPredicted RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 ERCC2P18074 760 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 ADORA2BP29275 332 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 ICAM3P32942 547 aa6.77□□□□□ -1.33
VPS39-202ENST00000348544 EIF2DP41214 584 aaKnown RBP6.77□□□□□ -1.33
VPS39-202ENST00000348544 MATKP42679 507 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms