RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ZDHHC7Q9NXF8 308 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 CACNA2D2Q9NY47 1150 aa19.32■□□□□ 0.68
COL9A3-201ENST00000343916 A0A1B0GTL3 188 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 E7ENX8 843 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 CDK14O94921 469 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 OGNP20774 298 aaKnown RBP19.31■□□□□ 0.68
COL9A3-201ENST00000343916 PSME3P61289 254 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 NFKB2Q00653 900 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 TYSND1Q2T9J0 566 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 SETMARQ53H47 684 aaPredicted RBP19.31■□□□□ 0.68
COL9A3-201ENST00000343916 REP15Q6BDI9 236 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 LARP4Q71RC2 724 aaKnown RBP eCLIP19.31■□□□□ 0.681e-11■□□□□ 8.4
COL9A3-201ENST00000343916 FAM126BQ8IXS8 530 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 LPCAT1Q8NF37 534 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 TRAPPC9Q96Q05 1148 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 GCNAQ96QF7 691 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 TRMOQ9BU70 441 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 RNF38Q9H0F5 515 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 MID1IP1Q9NPA3 183 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 NLE1Q9NVX2 485 aaPredicted RBP19.31■□□□□ 0.68
COL9A3-201ENST00000343916 COMMD8Q9NX08 183 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 GALPQ9UBC7 116 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 ACOT8O14734 319 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 KDELR3O43731 214 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 STC2O76061 302 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 RHOBTB1O94844 696 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 SEC24AO95486 1093 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 CRTAMO95727 393 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 RHOCP08134 193 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 ALDOCP09972 364 aaKnown RBP19.31■□□□□ 0.68
COL9A3-201ENST00000343916 GFAPP14136 432 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 SUOXP51687 545 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 NME5P56597 212 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 RALGDSQ12967 914 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 HECTD3Q5T447 861 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 SEPT8Q92599 483 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 ATOH8Q96SQ7 321 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 PCDHAC1Q9H158 963 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 SCUBE2Q9NQ36 999 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 PHF24Q9UPV7 400 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 SCN5AQ14524 2016 aa19.31■□□□□ 0.68
COL9A3-201ENST00000343916 UQCRBP14927 111 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 CR2P20023 1033 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 BFSP2Q13515 415 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 LAMB3Q13751 1172 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 LRP8Q14114 963 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 OGFRL1Q5TC84 451 aaPredicted RBP19.3■□□□□ 0.68
COL9A3-201ENST00000343916 LILRA2Q8N149 483 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 TRPC4APQ8TEL6 797 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 C2orf15Q8WU43 125 aaKnown RBP19.3■□□□□ 0.68
COL9A3-201ENST00000343916 SLC39A3Q9BRY0 314 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 VN1R3Q9BXE9 311 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 TDRD1Q9BXT4 1180 aaKnown RBP19.3■□□□□ 0.68
COL9A3-201ENST00000343916 BPIFA1Q9NP55 256 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 C2orf78A6NCI8 922 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 TXNDC9O14530 226 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 BCAS2O75934 225 aaPredicted RBP19.3■□□□□ 0.68
COL9A3-201ENST00000343916 SRP72O76094 671 aaKnown RBP19.3■□□□□ 0.68
COL9A3-201ENST00000343916 VCLP18206 1134 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 MED21Q13503 144 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 CYTH1Q15438 398 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 SLC8B1Q6J4K2 584 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 SPATA24Q86W54 205 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 LPGAT1Q92604 370 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 AKTIPQ9H8T0 292 aa19.3■□□□□ 0.68
COL9A3-201ENST00000343916 AGO1Q9UL18 857 aaKnown RBP19.3■□□□□ 0.68
COL9A3-201ENST00000343916 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 NCF1BA6NI72 391 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 NCF1CA8MVU1 366 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 OR1I1O60431 355 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 CLDN11O75508 207 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 PENKP01210 267 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 NCF1P14598 390 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 HMGA1P17096 107 aaKnown RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 CCL23P55773 120 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 STX5Q13190 355 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 ZNF177Q13360 481 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 PSAPL1Q6NUJ1 521 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 FBXL19Q6PCT2 694 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 PIANPQ8IYJ0 282 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 CLYBLQ8N0X4 340 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 EFHBQ8N7U6 833 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 PXYLP1Q8TE99 480 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 SLC30A3Q99726 388 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 MUC3BQ9H195 1237 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 SMPD4Q9NXE4 827 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 C6orf203Q9P0P8 240 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 PDP2Q9P2J9 529 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 DTNAQ9Y4J8 743 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 SUPT3HB4E1H0 165 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 C9JVG2 144 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 GPR39O43194 453 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 SNAP91O60641 907 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 PQBP1O60828 265 aaKnown RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 SUPT3HO75486 399 aa19.29■□□□□ 0.68
COL9A3-201ENST00000343916 SNRPB2P08579 225 aaKnown RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 ALDH7A1P49419 539 aaKnown RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 TSNQ15631 228 aaKnown RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 RNF219Q5W0B1 726 aaPredicted RBP19.29■□□□□ 0.68
COL9A3-201ENST00000343916 CDK5RAP1Q96SZ6 601 aaKnown RBP19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms