RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 C1RP00736 705 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 ITGB6P18564 788 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 IMPDH1P20839 514 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 FDXRP22570 491 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 GKP32189 559 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 AGTR2P50052 363 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 RING1Q06587 406 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 DEFB115Q30KQ5 88 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 FAM126BQ8IXS8 530 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 AFAP1L2Q8N4X5 818 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 SPATA17Q96L03 361 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 DEFB118Q96PH6 123 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 VN1R3Q9BXE9 311 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 KLHL4Q9C0H6 718 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 SEMA6AQ9H2E6 1030 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 ZNF385DQ9H6B1 395 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 POLR3BQ9NW08 1133 aaPredicted RBP10.32□□□□□ -0.76
LIMA1-201ENST00000341247 RNF112Q9ULX5 631 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 RAI2Q9Y5P3 530 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 MYO7AQ13402 2215 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 A6NHS1 94 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 ENO4A6NNW6 628 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 H0Y626 953 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 K7ERQ8 282 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 CRCPO75575 148 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 ZDHHC11BP0C7U3 371 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 STC1P52823 247 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 PSME3P61289 254 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 PIGGQ5H8A4 983 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 HABP4Q5JVS0 413 aaKnown RBP10.32□□□□□ -0.76
LIMA1-201ENST00000341247 KBTBD6Q86V97 674 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 SLC22A9Q8IVM8 553 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 PGAM4Q8N0Y7 254 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 CPSF7Q8N684 471 aaKnown RBP10.32□□□□□ -0.76
LIMA1-201ENST00000341247 SLC43A3Q8NBI5 491 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 SIDT2Q8NBJ9 832 aaKnown RBP10.32□□□□□ -0.76
LIMA1-201ENST00000341247 CCDC126Q96EE4 140 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 UNC93B1Q9H1C4 597 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 TRPM5Q9NZQ8 1165 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 TRANK1O15050 2925 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 BTN3A1O00481 513 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 TBC1D4O60343 1298 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 CDK14O94921 469 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 PRAMEF12O95522 483 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 PRLP01236 227 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 MBL2P11226 248 aaPredicted RBP10.32□□□□□ -0.76
LIMA1-201ENST00000341247 CHRM3P20309 590 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 ME2P23368 584 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 EEF1DP29692 281 aaKnown RBP10.32□□□□□ -0.76
LIMA1-201ENST00000341247 PRDX3P30048 256 aaKnown RBP10.32□□□□□ -0.76
LIMA1-201ENST00000341247 CDH4P55283 916 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 CYTH1Q15438 398 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 CYHR1Q6ZMK1 362 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 JADE3Q92613 823 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 C19orf60Q96EN9 201 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 LRCH3Q96II8 777 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 HBEGFQ99075 208 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 MAGEH1Q9H213 219 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 VCXQ9H320 206 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 AKTIPQ9H8T0 292 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 PCDHB9Q9Y5E1 797 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 DNAJC15Q9Y5T4 150 aa10.32□□□□□ -0.76
LIMA1-201ENST00000341247 H3BNC9 293 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 NR5A2O00482 541 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 FBP2O00757 339 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 PIP5K1BO14986 540 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 TBL1XO60907 577 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 ALPIP09923 528 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 MC4RP32245 332 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 ALDH1A3P47895 512 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 HERVK_113P63132 956 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 ELAVL2Q12926 359 aaKnown RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 GRB7Q14451 532 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 USP41Q3LFD5 358 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 REP15Q6BDI9 236 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 TADA1Q96BN2 335 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 TUBGCP3Q96CW5 907 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 CCDC97Q96F63 343 aaPredicted RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 MAELQ96JY0 434 aaKnown RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 KLHL32Q96NJ5 620 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 PSKH2Q96QS6 385 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 MGME1Q9BQP7 344 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 CLSTN3Q9BQT9 956 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 AARSD1Q9BTE6 412 aaKnown RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 ERVK-6Q9BXR3 956 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 VPS28Q9UK41 221 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 COMMD10Q9Y6G5 202 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 COL4A6Q14031 1691 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 PRRG1O14668 218 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 CLASP2O75122 1294 aaKnown RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 CRTAMO95727 393 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 LYNP07948 512 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 ALDOCP09972 364 aaKnown RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 SMAD3P84022 425 aaKnown RBP10.31□□□□□ -0.76
LIMA1-201ENST00000341247 PDSS2Q86YH6 399 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 PQLC1Q8N2U9 271 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 LRGUKQ96M69 825 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 HIPK3Q9H422 1215 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 MEAF6Q9HAF1 191 aa10.31□□□□□ -0.76
LIMA1-201ENST00000341247 PIDD1Q9HB75 910 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms