RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 DPPA5A6NC42 116 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 NKRFO15226 690 aaKnown RBP eCLIP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 SCELO95171 688 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 ARCN1P48444 511 aaKnown RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 ZC3H7AQ8IWR0 971 aaKnown RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 MAFIPQ8WZ33 124 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 EBNA1BP2Q99848 306 aaKnown RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 TMEM168Q9H0V1 697 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 ALG5Q9Y673 324 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 KCNK1O00180 336 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 CHRNA5P30532 468 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 RASGEF1BQ0VAM2 473 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 MAB21L1Q13394 359 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 FAM76BQ5HYJ3 339 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 ZNF410Q86VK4 478 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 SLC34A3Q8N130 599 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 CARNMT1Q8N4J0 409 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 EPORP19235 508 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 PPP2R2BQ00005 443 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 CNPY1Q3B7I2 92 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 ZNF772Q68DY9 489 aaPredicted RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 FAM13CQ8NE31 585 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 SLC35C2Q9NQQ7 365 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 THUMPD1Q9NXG2 353 aaKnown RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 KLQ9UEF7 1012 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 PCDHGB7Q9Y5F8 929 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 TCRBV9S1A1TA0A576 114 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 SLC37A4O43826 429 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 HTR7P34969 479 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 OR2B6P58173 313 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 PPP3R1P63098 170 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 ZCCHC23Q6ZST2 131 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 KIAA0895Q8NCT3 520 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 RERGQ96A58 199 aaPredicted RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 COMMD4Q9H0A8 199 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 C14orf105Q9NVL8 296 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 MRPS33Q9Y291 106 aaKnown RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 CRB1P82279 1406 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 LMO7Q8WWI1 1683 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 PSKH1P11801 424 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 SEPHS1P49903 392 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 ANTXR2P58335 489 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 RAB11FIP2Q7L804 512 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 MIB1Q86YT6 1006 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 TSEN2Q8NCE0 465 aaKnown RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 CEP170BQ9Y4F5 1589 aaPredicted RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 HNRNPH3P31942 346 aaKnown RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 FAM171BQ6P995 826 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 RCN3Q96D15 328 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 CCSER2Q9H7U1 834 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 THG1LQ9NWX6 298 aaKnown RBP14.26□□□□□ -0.13
COL7A1-201ENST00000328333 SEC14L3Q9UDX4 400 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 KCNE2Q9Y6J6 123 aa14.26□□□□□ -0.13
COL7A1-201ENST00000328333 DNAJB5O75953 348 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 AP2A2O94973 939 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 DPY19L1Q2PZI1 675 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 TAS1R2Q8TE23 839 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 DNAJC1Q96KC8 554 aaKnown RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 NOTOA8MTQ0 251 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 GRSF1Q12849 480 aaKnown RBP eCLIP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 SV2AQ7L0J3 742 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 RANBP3Q9H6Z4 567 aaPredicted RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 PLEKHA1Q9HB21 404 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 ADGRE2Q9UHX3 823 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 ANXA2P2A6NMY6 339 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 TTLL13PA6NNM8 815 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 ANXA2P07355 339 aaKnown RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 CYP4B1P13584 511 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 TUBP50607 506 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 CACNB3P54284 484 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 GJB7Q6PEY0 223 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 ZNF517Q6ZMY9 492 aaPredicted RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 PCDH20Q8N6Y1 951 aaKnown RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 ZBTB8BQ8NAP8 495 aaPredicted RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 DNERQ8NFT8 737 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 CALCAP01258 141 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 MBL2P11226 248 aaPredicted RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 BAATQ14032 418 aaPredicted RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 OR2B2Q9GZK3 357 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 EFCAB9A8MZ26 197 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 RNF220Q5VTB9 566 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 RANBP3LQ86VV4 465 aaPredicted RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 ADAM32Q8TC27 787 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 NTRK1P04629 796 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 MMP10P09238 476 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 DUPD1Q68J44 220 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 TAPT1Q6NXT6 567 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 ZNF730Q6ZMV8 503 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 JAZF1Q86VZ6 243 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 GPRC5AQ8NFJ5 357 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 FBXO6Q9NRD1 293 aaPredicted RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 AKAP12Q02952 1782 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 TOP3BO95985 862 aaKnown RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 FMO4P31512 558 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 AMIGO2Q86SJ2 522 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 SEPT12Q8IYM1 358 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 CMTR2Q8IYT2 770 aaKnown RBP14.25□□□□□ -0.13
COL7A1-201ENST00000328333 ZNF780BQ9Y6R6 833 aa14.25□□□□□ -0.13
COL7A1-201ENST00000328333 A0A1B0GVC2 190 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms