RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ACTN1P12814 892 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 UBA1P22314 1058 aaKnown RBP3.38□□□□□ -1.87
HMGB1-201ENST00000326004 MCM3P25205 808 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 HADHAP40939 763 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 EIF2S3P41091 472 aaKnown RBP3.38□□□□□ -1.87
HMGB1-201ENST00000326004 PRCPP42785 496 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 FASLGP48023 281 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 CDH8P55286 799 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 MRPS34P82930 218 aaKnown RBP3.38□□□□□ -1.87
HMGB1-201ENST00000326004 MC1RQ01726 317 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 CREB5Q02930 508 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 ACSM2AQ08AH3 577 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 GRIK2Q13002 908 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 CUL4AQ13619 759 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 DUSP28Q4G0W2 176 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 CDONQ4KMG0 1287 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 PLEKHS1Q5SXH7 462 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 GKAP1Q5VSY0 366 aaPredicted RBP3.38□□□□□ -1.87
HMGB1-201ENST00000326004 FAM69BQ5VUD6 431 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 ACSM2BQ68CK6 577 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 HIST2H2BCQ6DN03 193 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 HIST2H2BDQ6DRA6 164 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 FAM122CQ6P4D5 195 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 CHST9Q7L1S5 443 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 TEX11Q8IYF3 940 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 C1orf131Q8NDD1 294 aaKnown RBP3.38□□□□□ -1.87
HMGB1-201ENST00000326004 OR14L1PQ8NHC6 308 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 WFIKKN2Q8TEU8 576 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 WASF1Q92558 559 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 MOAP1Q96BY2 351 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 MTBPQ96DY7 904 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 FAM120BQ96EK7 910 aaKnown RBP3.38□□□□□ -1.87
HMGB1-201ENST00000326004 PPP1R13BQ96KQ4 1090 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 LYZL4Q96KX0 146 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 FTOQ9C0B1 505 aaKnown RBP eCLIP3.38□□□□□ -1.87
HMGB1-201ENST00000326004 CCDC68Q9H2F9 335 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 KCNN2Q9H2S1 579 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 MMP25Q9NPA2 562 aa3.38□□□□□ -1.87
HMGB1-201ENST00000326004 RSF1Q96T23 1441 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 IGLV5-52A0A0A0MRZ9 124 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 hDV102S1A0JD36 115 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 LINC01553A4QN01 128 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 AGAP14A8MT82 685 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 PLRG1O43660 514 aaKnown RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 HS6ST1O60243 411 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 NDUFS7O75251 213 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 GFPT2O94808 682 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 NTN1O95631 604 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 HIST1H2ABP04908 130 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 ALPLP05186 524 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 RB1P06400 928 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 SNHG28P0DPA3 235 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 SRCP12931 536 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 HIST1H2ADP20671 130 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 LMO1P25800 156 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 HOXA11P31270 313 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 CDKN2AP42771 156 aaKnown RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 HTR6P50406 440 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 PEX5P50542 639 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 GALCP54803 685 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 FOXG1P55316 489 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 HNRNPH2P55795 449 aaKnown RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 NLRP5P59047 1200 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 TAS2R40P59535 323 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 SEC61BP60468 96 aaKnown RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 SEC61A1P61619 476 aaKnown RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 CSNK2A1P68400 391 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 CHAF1BQ13112 559 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 ACVR2BQ13705 512 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 WTAPQ15007 396 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 CTF1Q16619 201 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 ASTE1Q2TB18 679 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 EIF2S3LQ2VIR3 472 aaKnown RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 ZSCAN23Q3MJ62 389 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 ATP13A5Q4VNC0 1218 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 RILPL1Q5EBL4 403 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 FRG2Q64ET8 278 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 KRBA2Q6ZNG9 492 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 HIST3H2AQ7L7L0 130 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 CSNK2A3Q8NEV1 391 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 ZKSCAN4Q969J2 545 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 OR1F2PQ96R84 312 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 C1QTNF1Q9BXJ1 281 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 MAK16Q9BXY0 300 aaKnown RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 MAGIXQ9H6Y5 334 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 SLC9A2Q9UBY0 812 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 TBC1D29Q9UFV1 150 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 FBXW11Q9UKB1 542 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 ZNF215Q9UL58 517 aaPredicted RBP3.37□□□□□ -1.87
HMGB1-201ENST00000326004 ACSL5Q9ULC5 683 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 TNFRSF18Q9Y5U5 241 aa3.37□□□□□ -1.87
HMGB1-201ENST00000326004 KANSL1LA0AUZ9 987 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 PRSS47A8MTI9 375 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 LACTBL1A8MY62 500 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 PROB1E7EW31 1015 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 SOCS6O14544 535 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 CENPBP07199 599 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-201ENST00000326004 NGFRP08138 427 aa3.36□□□□□ -1.87
HMGB1-201ENST00000326004 SRPRAP08240 638 aaKnown RBP3.36□□□□□ -1.87
HMGB1-201ENST00000326004 CLTBP09497 229 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms