RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 DPF3Q92784 378 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 HIST1H2ACQ93077 130 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 TEKT5Q96M29 485 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 MYNNQ9NPC7 610 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 SBF2Q86WG5 1849 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 THRBP10828 461 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 PRPS1L1P21108 318 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 DSG3P32926 999 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 GRSF1Q12849 480 aaKnown RBP eCLIP4.01□□□□□ -1.77
USH2A-201ENST00000307340 PPM1LQ5SGD2 360 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 MACC1Q6ZN28 852 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 CLNKQ7Z7G1 428 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 NOP9Q86U38 636 aaKnown RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 CXorf40AQ8TE69 158 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 SLC7A6OSQ96CW6 309 aaPredicted RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 GNEQ9Y223 722 aaKnown RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 DOCK1Q14185 1865 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 KCNK1O00180 336 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 PITPNM1O00562 1244 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 ASMTLO95671 621 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 HPRP00739 348 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 MLH1P40692 756 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 VAC14Q08AM6 782 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 NME3Q13232 169 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 TEX44Q53QW1 395 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 ZC3H3Q8IXZ2 948 aaKnown RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 SPAG16Q8N0X2 631 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 OR2T34Q8NGX1 318 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 OR2T3Q8NH03 318 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 KAT5Q92993 513 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 COX4I2Q96KJ9 171 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 TM9SF2Q99805 663 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 PCMTD2Q9NV79 361 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 BTBD19C9JJ37 291 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 MAP3K6O95382 1288 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 HOXA13P31271 388 aaPredicted RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 IZUMO2Q6UXV1 221 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 HACD2Q6Y1H2 254 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 TMA16Q96EY4 203 aaKnown RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 SUPT3HB4E1H0 165 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 TCF7P36402 384 aaPredicted RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 CXCR4P61073 352 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 ZNF697Q5TEC3 545 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 TAPT1Q6NXT6 567 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 LCLAT1Q6UWP7 414 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 USP43Q70EL4 1123 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 DEFB107AQ8IZN7 70 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 ZUFSPQ96AP4 578 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 HNRNPABQ99729 332 aaKnown RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 PIDD1Q9HB75 910 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 SFMBT1Q9UHJ3 866 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 hCG_2014768A0A024R1R8 64 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 HYKKA2RU49 373 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 SCGB2A1O75556 95 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 LPOP22079 712 aaPredicted RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 CRYBB1P53674 252 aaPredicted RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 DBPQ10586 325 aaPredicted RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 CAMK1Q14012 370 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 ZNF829Q3KNS6 432 aaPredicted RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 LBX2Q6XYB7 198 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 OR8J3Q8NGG0 315 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 SLC44A1Q8WWI5 657 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 CHP1Q99653 195 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 DDX28Q9NUL7 540 aaKnown RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 TMEM59LQ9UK28 342 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 ERVW-1Q9UQF0 538 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 SIK3Q9Y2K2 1263 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 PCDHB5Q9Y5E4 795 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 LRRTM2O43300 516 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 SLC22A3O75751 556 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 SERPINA1P01009 418 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 ACPPP15309 386 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 GRM5P41594 1212 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 SERPINA13PQ6UXR4 307 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 NPLOC4Q8TAT6 608 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 FBXO32Q969P5 355 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 FAM120BQ96EK7 910 aaKnown RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 ART5Q96L15 291 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 INPP4AQ96PE3 977 aaPredicted RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 CPXM1Q96SM3 734 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 HSD17B14Q9BPX1 270 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 C11orf49Q9H6J7 331 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 TRIM49D1C9J1S8 452 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 AP2A1O95782 977 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 PLK1P53350 603 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 ACTC1P68032 377 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 ACTA1P68133 377 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 LAMTOR4Q0VGL1 99 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 BNIP1Q12981 228 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 GRB10Q13322 594 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 SETMARQ53H47 684 aaPredicted RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 ARMC12Q5T9G4 340 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 FAM173BQ6P4H8 233 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 KIAA0895Q8NCT3 520 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 FBXO25Q8TCJ0 367 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 FAM118BQ9BPY3 351 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 PAK1IP1Q9NWT1 392 aaPredicted RBP4.01□□□□□ -1.77
USH2A-201ENST00000307340 KLQ9UEF7 1012 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 TSPAN16Q9UKR8 245 aa4.01□□□□□ -1.77
USH2A-201ENST00000307340 ATG4BQ9Y4P1 393 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms