RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 SEMA5AQ13591 1074 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 SEPT6Q14141 434 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 SPARCL1Q14515 664 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 PUM1Q14671 1186 aaKnown RBP eCLIP10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 CDKN3Q16667 212 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 CYP1B1Q16678 543 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 PRAMEF14Q5SWL7 426 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 ZDHHC20Q5W0Z9 365 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 KCTD11Q693B1 232 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 RANBP10Q6VN20 620 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 SYT10Q6XYQ8 523 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 KDM7AQ6ZMT4 941 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 TMC3Q7Z5M5 1100 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 PRUNE1Q86TP1 453 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 NAXDQ8IW45 347 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 KLHDC8BQ8IXV7 354 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 SETD7Q8WTS6 366 aaKnown RBP10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 C16orf45Q96MC5 204 aaPredicted RBP10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 RUNDC3BQ96NL0 473 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 ZSCAN5AQ9BUG6 496 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 RIOK2Q9BVS4 552 aaKnown RBP10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 SPATA16Q9BXB7 569 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 FAM83DQ9H4H8 585 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 RNF14Q9UBS8 474 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 APOBEC3BQ9UH17 382 aaKnown RBP10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 MOSPD1Q9UJG1 213 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 PCDHGB2Q9Y5G2 931 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 SPO11Q9Y5K1 396 aa10.96□□□□□ -0.65
CSPG4P1Y-201ENST00000306641 KNL1Q8NG31 2342 aa10.96□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 CABIN1Q9Y6J0 2220 aa10.96□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 K7ESM1 405 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 STX7O15400 261 aaKnown RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 PCDHGA12O60330 932 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 SDC3O75056 442 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 PPFIA2O75334 1257 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 PIAS2O75928 621 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 RASGRP1O95267 797 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 ECEL1O95672 775 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 KRT14P02533 472 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 CSF2P04141 144 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 HOXC4P09017 264 aaPredicted RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 ZSCAN5DPP0CG00 497 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 ALPPL2P10696 532 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 CTSEP14091 401 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 LPOP22079 712 aaPredicted RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 RPL22P35268 128 aaKnown RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 HMGCLP35914 325 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 TRIM23P36406 574 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 SPAM1P38567 509 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 GRK6P43250 576 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 CDK3Q00526 305 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 CDH17Q12864 832 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 FZD2Q14332 565 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 PPP1R7Q15435 360 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 TAF1AQ15573 450 aaPredicted RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 TRIP13Q15645 432 aaPredicted RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 ZNF542PQ5EBM4 170 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 HENMT1Q5T8I9 393 aaKnown RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 PDPK2PQ6A1A2 396 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 ADAMTSL4Q6UY14 1074 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 NLRP8Q86W28 1048 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 PHACTR4Q8IZ21 702 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 CBARPQ8N350 705 aaPredicted RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 GLIS1Q8NBF1 620 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 OR56A4Q8NGH8 313 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 SCAMP4Q969E2 229 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 FUBP1Q96AE4 644 aaKnown RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 PLEKHG4BQ96PX9 1271 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 ARNT2Q9HBZ2 717 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 BPIFA1Q9NP55 256 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 EIF2B3Q9NR50 452 aaKnown RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 NFKBIL1Q9UBC1 381 aaPredicted RBP10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 SPASTQ9UBP0 616 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 DOLKQ9UPQ8 538 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 GVINP1Q7Z2Y8 2422 aa10.95□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 NEMP2A6NFY4 417 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 CCDC188H7C350 402 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 KIF2AO00139 706 aaPredicted RBP10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 AP3B1O00203 1094 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 AURKAO14965 403 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 INPP4BO15327 924 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 ASMTLO95671 621 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 TNFP01375 233 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 NME1P15531 152 aaKnown RBP10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 BPIP17213 487 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 HADHAP40939 763 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 TERF1P54274 439 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 SRP54P61011 504 aaKnown RBP10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 SARNPP82979 210 aaKnown RBP10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 GPS1Q13098 491 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 EIF2B5Q13144 721 aaKnown RBP10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 LAMB3Q13751 1172 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 ITGA9Q13797 1035 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 TPRG1LQ5T0D9 272 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 TTC27Q6P3X3 843 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 DOK6Q6PKX4 331 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 RFLNAQ6ZTI6 216 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 RD3Q7Z3Z2 195 aa10.94□□□□□ -0.66
CSPG4P1Y-201ENST00000306641 GATAD2AQ86YP4 633 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms