RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 FOLH1Q04609 750 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 SETMARQ53H47 684 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 ALG1LQ6GMV1 187 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 EFHBQ8N7U6 833 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 DCUN1D1Q96GG9 259 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 SLC45A3Q96JT2 553 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 ATOH8Q96SQ7 321 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 PKP2Q99959 881 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 TSEN34Q9BSV6 310 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 TRMOQ9BU70 441 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 RNF38Q9H0F5 515 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 AK5Q9Y6K8 562 aa18.31■□□□□ 0.52
SHKBP1-201ENST00000291842 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 KDELR3O43731 214 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 OR1I1O60431 355 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 SEC24AO95486 1093 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 OGNP20774 298 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 NFKB2Q00653 900 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 LAMB3Q13751 1172 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 KIF19Q2TAC6 998 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 C5orf22Q49AR2 442 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 HECTD3Q5T447 861 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 DDIASQ8IXT1 998 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 CLYBLQ8N0X4 340 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 TTLL2Q9BWV7 592 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 AGO1Q9UL18 857 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 BTRCQ9Y297 605 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 EME2A4GXA9 379 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 TRIM38O00635 465 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 PIP5K1BO14986 540 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 DNAJA2O60884 412 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 NDUFS3O75489 264 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 STC2O76061 302 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 SUOXP51687 545 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 ECT2LQ008S8 904 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 ELAVL2Q12926 359 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 GRB7Q14451 532 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 CYTH1Q15438 398 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 TSNQ15631 228 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 TYSND1Q2T9J0 566 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 PITRM1Q5JRX3 1037 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 ACBD5Q5T8D3 534 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 PIANPQ8IYJ0 282 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 LPGAT1Q92604 370 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 PEX13Q92968 403 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 ATP6V1E2Q96A05 226 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 GPR21Q99679 349 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 SLC30A3Q99726 388 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 MUC3BQ9H195 1237 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 CCDC68Q9H2F9 335 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 HMX1Q9NP08 348 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 SEMA4BQ9NPR2 832 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 SMPD4Q9NXE4 827 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 GMPR2Q9P2T1 348 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 RIMS3Q9UJD0 308 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 RNF112Q9ULX5 631 aa18.3■□□□□ 0.52
SHKBP1-201ENST00000291842 ANKRD12Q6UB98 2062 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 C2orf78A6NCI8 922 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 CDC7O00311 574 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 MRASO14807 208 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 GPR39O43194 453 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 SNAP91O60641 907 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 CLASP2O75122 1294 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 EEF1DP29692 281 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 SMARCB1Q12824 385 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 ZNF177Q13360 481 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 BTG3Q14201 252 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 ADGRE1Q14246 886 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 RNF219Q5W0B1 726 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 PSAPL1Q6NUJ1 521 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 RAB44Q7Z6P3 723 aaPredicted RBP18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 FUNDC1Q8IVP5 155 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 TWIST2Q8WVJ9 160 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 SEPT8Q92599 483 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 LRCH3Q96II8 777 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 TDRD1Q9BXT4 1180 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 IL1RL2Q9HB29 575 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 COMMD8Q9NX08 183 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 UTP6Q9NYH9 597 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 CHD5Q8TDI0 1954 aa18.29■□□□□ 0.52
SHKBP1-201ENST00000291842 PRORSD1PA6NEY8 169 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 LINC00032P0C843 101 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 HOXD10P28358 340 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 CCL23P55773 120 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 MAPRE2Q15555 327 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 PTPRNQ16849 979 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 CYP2R1Q6VVX0 501 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 BHMTQ93088 406 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 ESAMQ96AP7 390 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 UNC93B1Q9H1C4 597 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 TAS2R13Q9NYV9 303 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 PDP2Q9P2J9 529 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 FKBPLQ9UIM3 349 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 ASB3Q9Y575 518 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 RAI2Q9Y5P3 530 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 NPEPPSL1A6NEC2 478 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 AZIN1O14977 448 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 PEX1O43933 1283 aa18.28■□□□□ 0.52
SHKBP1-201ENST00000291842 NRP2O60462 931 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms