RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 UBXN10Q96LJ8 280 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 TMEM248Q9NWD8 314 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 PDP2Q9P2J9 529 aa16.6■□□□□ 0.25
VPS54-201ENST00000272322 TSC2P49815 1807 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 SLCO1B7G3V0H7 640 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 FAM163BP0C2L3 166 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 CHN2P52757 468 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 ADGRE1Q14246 886 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 RABL3Q5HYI8 236 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 SMYD5Q6GMV2 418 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 RNF180Q86T96 592 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 TMEM74Q96NL1 305 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 NR1H4Q96RI1 486 aaPredicted RBP16.59■□□□□ 0.25
VPS54-201ENST00000272322 PCDHB7Q9Y5E2 793 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 KIF3CO14782 793 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 PRAMEF12O95522 483 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 TYMPP19971 482 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 HOXC13P31276 330 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 ZNF135P52742 658 aaPredicted RBP16.59■□□□□ 0.25
VPS54-201ENST00000272322 STX5Q13190 355 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 ZBTB46Q86UZ6 589 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 FUNDC1Q8IVP5 155 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 CLDN19Q8N6F1 224 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 TEX37Q96LM6 180 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 SOX17Q9H6I2 414 aaPredicted RBP16.59■□□□□ 0.25
VPS54-201ENST00000272322 ZMYM5Q9UJ78 669 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 CROTQ9UKG9 612 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 PCDHB9Q9Y5E1 797 aa16.59■□□□□ 0.25
VPS54-201ENST00000272322 K7ERQ8 282 aa16.58■□□□□ 0.25
VPS54-201ENST00000272322 NPHS1O60500 1241 aa16.58■□□□□ 0.25
VPS54-201ENST00000272322 ALPIP09923 528 aa16.58■□□□□ 0.25
VPS54-201ENST00000272322 CD1DP15813 335 aa16.58■□□□□ 0.25
VPS54-201ENST00000272322 IMPDH1P20839 514 aa16.58■□□□□ 0.25
VPS54-201ENST00000272322 CDH15P55291 814 aa16.58■□□□□ 0.25
VPS54-201ENST00000272322 CPNE9Q8IYJ1 553 aa16.58■□□□□ 0.25
VPS54-201ENST00000272322 CARNMT1Q8N4J0 409 aa16.58■□□□□ 0.25
VPS54-201ENST00000272322 MDGA1Q8NFP4 955 aa16.58■□□□□ 0.25
VPS54-201ENST00000272322 SEPHS2Q99611 448 aa16.58■□□□□ 0.25
VPS54-201ENST00000272322 PRPF19Q9UMS4 504 aaKnown RBP16.58■□□□□ 0.25
VPS54-201ENST00000272322 RALGAPA2Q2PPJ7 1873 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 SLC7A4O43246 635 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 PQBP1O60828 265 aaKnown RBP16.58■□□□□ 0.24
VPS54-201ENST00000272322 OAZ2O95190 189 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 TRIM25Q14258 630 aaKnown RBP16.58■□□□□ 0.24
VPS54-201ENST00000272322 MAP3K21Q5TCX8 1036 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 FUT10Q6P4F1 479 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 FBXO39Q8N4B4 442 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 ASB3Q9Y575 518 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 hCG_2014768A0A024R1R8 64 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 ANGPT2O15123 496 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 KLKB1P03952 638 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 ZNF37AP17032 561 aaPredicted RBP16.58■□□□□ 0.24
VPS54-201ENST00000272322 PRDX6P30041 224 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 NDST2P52849 883 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 PLOD1Q02809 727 aaPredicted RBP16.58■□□□□ 0.24
VPS54-201ENST00000272322 GNA12Q03113 381 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 TRIP4Q15650 581 aaPredicted RBP16.58■□□□□ 0.24
VPS54-201ENST00000272322 LRRC73Q5JTD7 316 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 CCDC28BQ9BUN5 200 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 CD274Q9NZQ7 290 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 FCF1Q9Y324 198 aaKnown RBP16.58■□□□□ 0.24
VPS54-201ENST00000272322 CROCCQ5TZA2 2017 aa16.58■□□□□ 0.24
VPS54-201ENST00000272322 C7orf72A4D263 438 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 E5RI56 91 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 TRIM38O00635 465 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 CLPTM1O96005 669 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 OXCT1P55809 520 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 PLD1Q13393 1074 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 RAB44Q7Z6P3 723 aaPredicted RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 EEF1AKMT1Q8WVE0 214 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 TUBB1Q9H4B7 451 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 LIN28AQ9H9Z2 209 aaKnown RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 POLR3BQ9NW08 1133 aaPredicted RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 RIMS3Q9UJD0 308 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 C2orf78A6NCI8 922 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 ACOT8O14734 319 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 AZIN1O14977 448 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 ATF6P18850 670 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 CAPN3P20807 821 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 CSRP3P50461 194 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 GSTA3Q16772 222 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 RNF219Q5W0B1 726 aaPredicted RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 DNAJC14Q6Y2X3 702 aaPredicted RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 ZNF683Q8IZ20 524 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 CD99L2Q8TCZ2 262 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 BCL7CQ8WUZ0 217 aaPredicted RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 CENPKQ9BS16 269 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 APOL5Q9BWW9 433 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 MFSD1Q9H3U5 465 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 SPAG4Q9NPE6 437 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 MYLKQ15746 1914 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 SCN10AQ9Y5Y9 1956 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 PLOD2O00469 737 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 CA12O43570 354 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 MTHFD2P13995 350 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 TIAL1Q01085 375 aaKnown RBP eCLIP16.57■□□□□ 0.24
VPS54-201ENST00000272322 DSC1Q08554 894 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 TIGD2Q4W5G0 525 aa16.57■□□□□ 0.24
VPS54-201ENST00000272322 OGFRL1Q5TC84 451 aaPredicted RBP16.57■□□□□ 0.24
VPS54-201ENST00000272322 AFMIDQ63HM1 303 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms