RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 MIEF2Q96C03 454 aa18.67■□□□□ 0.58
PDLIM4-201ENST00000253754 MEAF6Q9HAF1 191 aa18.67■□□□□ 0.58
PDLIM4-201ENST00000253754 SCUBE2Q9NQ36 999 aa18.67■□□□□ 0.58
PDLIM4-201ENST00000253754 FAM50BQ9Y247 325 aa18.67■□□□□ 0.58
PDLIM4-201ENST00000253754 INSL6Q9Y581 213 aa18.67■□□□□ 0.58
PDLIM4-201ENST00000253754 H3BNX3 289 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 SLC22A2O15244 555 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 SNAP91O60641 907 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 CLDN11O75508 207 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 XRCC1P18887 633 aaPredicted RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 CR2P20023 1033 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 FMO4P31512 558 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 ZRSR2Q15696 482 aaKnown RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 FBXO48Q5FWF7 155 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 RNF219Q5W0B1 726 aaPredicted RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 BNC2Q6ZN30 1099 aaPredicted RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 PTGR2Q8N8N7 351 aaPredicted RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 STON2Q8WXE9 905 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 JADE3Q92613 823 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 TMA16Q96EY4 203 aaKnown RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 TDRD1Q9BXT4 1180 aaKnown RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 WDR41Q9HAD4 459 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 IKZF3Q9UKT9 509 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 TRAF6Q9Y4K3 522 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 CARNS1A5YM72 827 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 PRRG1O14668 218 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 ALDH1A3P47895 512 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 KLC1Q07866 573 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 ZNF177Q13360 481 aaPredicted RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 PDAP1Q13442 181 aaKnown RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 CEACAM7Q14002 265 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 RAB33AQ14088 237 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 TTC16Q8NEE8 873 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 PEX13Q92968 403 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 ECSITQ9BQ95 431 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 AARSD1Q9BTE6 412 aaKnown RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 MUC3BQ9H195 1237 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 TRPC7Q9HCX4 862 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 NLE1Q9NVX2 485 aaPredicted RBP18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 STK39Q9UEW8 545 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 MED16Q9Y2X0 877 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 PTGDR2Q9Y5Y4 395 aa18.66■□□□□ 0.58
PDLIM4-201ENST00000253754 XIRP2A4UGR9 3374 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 TEX28O15482 410 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 LINC00271P0C7V0 271 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 PEX2P28328 305 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 SLC26A3P40879 764 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 ARF5P84085 180 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 MTA1Q13330 715 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 HERC3Q15034 1050 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 PFKFB4Q16877 469 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 ZNF423Q2M1K9 1284 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 SETMARQ53H47 684 aaPredicted RBP18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 PIGGQ5H8A4 983 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 CXorf57Q6NSI4 855 aaKnown RBP18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 SDCCAG8Q86SQ7 713 aaPredicted RBP18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 SETD3Q86TU7 594 aaPredicted RBP18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 KBTBD6Q86V97 674 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 KLHL23Q8NBE8 558 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 PDZD8Q8NEN9 1154 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 L3HYPDHQ96EM0 354 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 NSUN5Q96P11 429 aaKnown RBP18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 FBRSL1Q9HCM7 1045 aaKnown RBP18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 BPIFA1Q9NP55 256 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 TRPM5Q9NZQ8 1165 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 GALPQ9UBC7 116 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 PRPF19Q9UMS4 504 aaKnown RBP18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 CHD5Q8TDI0 1954 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 ILVBLA1L0T0 632 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 KIF1CO43896 1103 aaKnown RBP18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 CRTAMO95727 393 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 SPATA31D3P0C874 917 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 OGNP20774 298 aaKnown RBP18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 SUOXP51687 545 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 HERVK_113P63132 956 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 SATB1Q01826 763 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 ART3Q13508 389 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 TAF12Q16514 161 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 TYSND1Q2T9J0 566 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 PAQR3Q6TCH7 311 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 SPATA31D4Q6ZUB0 917 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 CHSY3Q70JA7 882 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 EFHBQ8N7U6 833 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 FAM156AQ8NDB6 213 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 BHMTQ93088 406 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 PLD4Q96BZ4 506 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 C3orf30Q96M34 536 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 ERVK-6Q9BXR3 956 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 YIPF1Q9Y548 306 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 RAI2Q9Y5P3 530 aa18.65■□□□□ 0.58
PDLIM4-201ENST00000253754 LIN7AO14910 233 aaPredicted RBP18.64■□□□□ 0.57
PDLIM4-201ENST00000253754 SMIM24O75264 130 aa18.64■□□□□ 0.57
PDLIM4-201ENST00000253754 SNUPNO95149 360 aaKnown RBP18.64■□□□□ 0.57
PDLIM4-201ENST00000253754 CSPG5O95196 566 aa18.64■□□□□ 0.57
PDLIM4-201ENST00000253754 CD160O95971 181 aa18.64■□□□□ 0.57
PDLIM4-201ENST00000253754 F11P03951 625 aa18.64■□□□□ 0.57
PDLIM4-201ENST00000253754 BMP1P13497 986 aa18.64■□□□□ 0.57
PDLIM4-201ENST00000253754 MTHFD2P13995 350 aa18.64■□□□□ 0.57
PDLIM4-201ENST00000253754 ADSLP30566 484 aaPredicted RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms