RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 MTFMTQ96DP5 389 aaKnown RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 C9orf16Q9BUW7 83 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 CHID1Q9BWS9 393 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 IGSF5Q9NSI5 407 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 CMTM6Q9NX76 183 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 CD274Q9NZQ7 290 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 ANAPC2Q9UJX6 822 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 TBC1D30Q9Y2I9 924 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 NRCAMQ92823 1304 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 A8MX80 341 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 AP1G1O43747 822 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 KDM1AO60341 852 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 SOAT2O75908 522 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 DARSP14868 501 aaKnown RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 POU4F1Q01851 419 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 SNX17Q15036 470 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 KCTD11Q693B1 232 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 TAS2R42Q7RTR8 314 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 TICAM1Q8IUC6 712 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 CLYBLQ8N0X4 340 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 FBXO39Q8N4B4 442 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 CPSF7Q8N684 471 aaKnown RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 ZMIZ2Q8NF64 920 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 LRRC58Q96CX6 371 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 PLEKHA8Q96JA3 519 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 TEX37Q96LM6 180 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 GPR78Q96P69 363 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 PPP1R10Q96QC0 940 aaKnown RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 IFT80Q9P2H3 777 aaPredicted RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 LIMD1Q9UGP4 676 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 SH3BP1Q9Y3L3 701 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 TSC22D4Q9Y3Q8 395 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 A0A087X1B8 175 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 H3BMQ9 156 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 PIRO00625 290 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 BNIP3LO60238 219 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 CLASP2O75122 1294 aaKnown RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 LBPP18428 481 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 PNPLA4P41247 253 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 PRKAA2P54646 552 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 PTPRRQ15256 657 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 DDR2Q16832 855 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 PGS1Q32NB8 556 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 ZBED5Q49AG3 693 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 GPR180Q86V85 440 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 ZNF513Q8N8E2 541 aaPredicted RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 SKA2Q8WVK7 121 aaPredicted RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 TSPAN17Q96FV3 270 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 NSMCE2Q96MF7 247 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 COG8Q96MW5 612 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 RPRD1AQ96P16 312 aaPredicted RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 NACA2Q9H009 215 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 MROH8Q9H579 483 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 ZFP14Q9HCL3 533 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 GALPQ9UBC7 116 aa11.94□□□□□ -0.5
USHBP1-201ENST00000252597 AFF4Q9UHB7 1163 aaKnown RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 PRG3Q9Y2Y8 225 aaPredicted RBP11.94□□□□□ -0.5
USHBP1-201ENST00000252597 TRIM43BA6NCK2 446 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 MYO1GB0I1T2 1018 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 HS6ST1O60243 411 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 NPHS1O60500 1241 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CNMDO75829 334 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CDK14O94921 469 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CCNA2P20248 432 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 GTF2H3Q13889 308 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 NHSL2Q5HYW2 709 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 PAGE3Q5JUK9 113 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 EPHX4Q8IUS5 362 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 TFAP2CQ92754 450 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 SEMA3CQ99985 751 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 GPATCH1Q9BRR8 931 aaKnown RBP11.93□□□□□ -0.5
USHBP1-201ENST00000252597 APOL5Q9BWW9 433 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 MIR1-1HGQ9H1L0 117 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 PRDM8Q9NQV8 689 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 SMPD3Q9NY59 655 aaPredicted RBP11.93□□□□□ -0.5
USHBP1-201ENST00000252597 PCDH10Q9P2E7 1040 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 MAP10Q9P2G4 905 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 A8MU76 341 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CFAP99D6REC4 459 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 GPR39O43194 453 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CNTN5O94779 1100 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 GLP2RO95838 553 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 HAPLN1P10915 354 aaPredicted RBP11.93□□□□□ -0.5
USHBP1-201ENST00000252597 SLC2A3P11169 496 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 BMXP51813 675 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 DNASE1L3Q13609 305 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 ZNF235Q14590 738 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 FAM187BQ17R55 369 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 ATP6AP1LQ52LC2 224 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 RAP1GAP2Q684P5 730 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 TMEM207Q6UWW9 146 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 IFNLR1Q8IU57 520 aaPredicted RBP11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CENPSQ8N2Z9 138 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 SLC15A4Q8N697 577 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 C3orf58Q8NDZ4 430 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 GPRC5AQ8NFJ5 357 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 CASP10Q92851 521 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 GLMNQ92990 594 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 SLC10A4Q96EP9 437 aa11.93□□□□□ -0.5
USHBP1-201ENST00000252597 FAR2Q96K12 515 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms