RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 GPR88Q9GZN0 384 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 STON1Q9Y6Q2 735 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 CLDN4O14493 209 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 PPP1R11O60927 126 aaPredicted RBP18.92■□□□□ 0.62
SMPD3-201ENST00000219334 ACLYP53396 1101 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 LILRA4P59901 499 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 SNX27Q96L92 541 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 STXBP5LQ9Y2K9 1186 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 KLRG2A4D1S0 409 aaPredicted RBP18.92■□□□□ 0.62
SMPD3-201ENST00000219334 TNFAIP8O95379 198 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 IL6P05231 212 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 CMPK1P30085 196 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 MASP1P48740 699 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 MAPKAPK2P49137 400 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 AP1S1P61966 158 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 RHAGQ02094 409 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 NR1D2Q14995 579 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 NOMO1Q15155 1222 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 VITQ6UXI7 678 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 SLC26A9Q7LBE3 791 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.92■□□□□ 0.62
SMPD3-201ENST00000219334 MIEF2Q96C03 454 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 PCED1BQ96HM7 432 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 TRMOQ9BU70 441 aa18.92■□□□□ 0.62
SMPD3-201ENST00000219334 C4BPAP04003 597 aaKnown RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 CDH5P33151 784 aaPredicted RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 ZNF280AP59817 542 aaPredicted RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 BST1Q10588 318 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 TTC23Q5W5X9 447 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 IFNL1Q8IU54 200 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 ZCCHC7Q8N3Z6 543 aaKnown RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 CKAP2Q8WWK9 683 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 NDRG1Q92597 394 aaKnown RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 MRPL39Q9NYK5 338 aaKnown RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 BIRC5O15392 142 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 RPL17P18621 184 aaKnown RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 GPM6BQ13491 265 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 PEX5LQ8IYB4 626 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 SLC22A17Q8WUG5 538 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 STYXQ8WUJ0 223 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 POP5Q969H6 163 aaKnown RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 KREMEN1Q96MU8 473 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 DRG2P55039 364 aaKnown RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 CCNYL2Q5T2Q4 361 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 CPTPQ5TA50 214 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 IRF2BP2Q7Z5L9 587 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 TNS4Q8IZW8 715 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 BRINP2Q9C0B6 783 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 GGA2Q9UJY4 613 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 RGSL1A5PLK6 1076 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 CST3P01034 146 aaPredicted RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 COX4I1P13073 169 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 GABRB2P47870 512 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 TRAF3Q13114 568 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 OTOP3Q7RTS5 596 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 C2orf73Q8N5S3 287 aaPredicted RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 TTC29Q8NA56 475 aaPredicted RBP18.91■□□□□ 0.62
SMPD3-201ENST00000219334 TRIM8Q9BZR9 551 aa18.91■□□□□ 0.62
SMPD3-201ENST00000219334 GNSP15586 552 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 CCNCP24863 283 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 CDH13P55290 713 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 USP46P62068 366 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 SPANXN2Q5MJ10 180 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 RNASEH2BQ5TBB1 312 aaKnown RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 PRSS55Q6UWB4 352 aaPredicted RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 DEPDC4Q8N2C3 294 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 MAGEE2Q8TD90 523 aaPredicted RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 PRCCQ92733 491 aaPredicted RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 SCLYQ96I15 445 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 C5orf34Q96MH7 638 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 ZNF624Q9P2J8 865 aaPredicted RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 NPEPPSL1A6NEC2 478 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 SLC38A8A6NNN8 435 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 CCNA2P20248 432 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 AKT2P31751 481 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 MYBPC1Q00872 1141 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 TLE2Q04725 743 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 TRIM25Q14258 630 aaKnown RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 RFTN2Q52LD8 501 aaPredicted RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 DEF8Q6ZN54 512 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 PTCD2Q8WV60 388 aaKnown RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 RAD51AP1Q96B01 352 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 ATP6AP2A0A1C7CYW4 349 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 KIF1CO43896 1103 aaKnown RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 ATP6AP2O75787 350 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 WARSP23381 471 aaKnown RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 AUHQ13825 339 aaKnown RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 SLC25A24Q6NUK1 477 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 LMLNQ96KR4 655 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 C3orf18Q9UK00 162 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 ABHD14A-ACY1A0A1B0GW23 586 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 TCRBV9S1A1TA0A576 114 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 KCNU1A8MYU2 1149 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 SLC31A1O15431 190 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 RCVRNP35243 200 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 USP4Q13107 963 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 TOP3AQ13472 1001 aaPredicted RBP18.9■□□□□ 0.62
SMPD3-201ENST00000219334 SEMA5AQ13591 1074 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 MINDY4Q4G0A6 757 aa18.9■□□□□ 0.62
SMPD3-201ENST00000219334 LCN9Q8WX39 176 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms