RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 DCAF12Q5T6F0 453 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 MARK2Q7KZI7 788 aaKnown RBP14.99□□□□□ -0.01
SYNE2-228ENST00000639659 MON1BQ7L1V2 547 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 PHF13Q86YI8 300 aaPredicted RBP14.99□□□□□ -0.01
SYNE2-228ENST00000639659 UNC5BQ8IZJ1 945 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 NAGSQ8N159 534 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 OR4D9Q8NGE8 314 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 FNIP1Q8TF40 1166 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 KIAA1143Q96AT1 154 aaPredicted RBP14.99□□□□□ -0.01
SYNE2-228ENST00000639659 COQ10AQ96MF6 247 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 B3GNT4Q9C0J1 378 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 CLSTN2Q9H4D0 955 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 GPN2Q9H9Y4 310 aaPredicted RBP14.99□□□□□ -0.01
SYNE2-228ENST00000639659 PCDHGC4Q9Y5F7 938 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 PCDHGA3Q9Y5H0 932 aa14.99□□□□□ -0.01
SYNE2-228ENST00000639659 BSNQ9UPA5 3926 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 IGHV1OR21-1A0A087WYE8 117 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 PPM1DO15297 605 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 FUCA1P04066 466 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 THRAP10827 490 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 PSMA2P25787 234 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 VIPR1P32241 457 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 ADCY8P40145 1251 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 MAPK9P45984 424 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 AP1S1P61966 158 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 OGDHQ02218 1023 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 TRA2AQ13595 282 aaKnown RBP eCLIP14.98□□□□□ -0.01
SYNE2-228ENST00000639659 C16orf46Q6P387 395 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 KDELC2Q7Z4H8 507 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 HSD11B1LQ7Z5J1 315 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 TRIM74Q86UV6 250 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 LURAP1LQ8IV03 231 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 NPWQ8N729 165 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 OR2M4Q96R27 311 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 KCTD15Q96SI1 283 aaPredicted RBP14.98□□□□□ -0.01
SYNE2-228ENST00000639659 DDA1Q9BW61 102 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 FRMD8Q9BZ67 464 aaPredicted RBP14.98□□□□□ -0.01
SYNE2-228ENST00000639659 CDH19Q9H159 772 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 TRNAU1APQ9NX07 287 aaKnown RBP14.98□□□□□ -0.01
SYNE2-228ENST00000639659 CD84Q9UIB8 345 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 TMEM98Q9Y2Y6 226 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 FLNCQ14315 2725 aa14.98□□□□□ -0.01
SYNE2-228ENST00000639659 TMCO5BA8MYB1 307 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 TRAFD1O14545 582 aaPredicted RBP14.97□□□□□ -0.01
SYNE2-228ENST00000639659 ATMINO43313 823 aaPredicted RBP14.97□□□□□ -0.01
SYNE2-228ENST00000639659 HEXIM1O94992 359 aaKnown RBP14.97□□□□□ -0.01
SYNE2-228ENST00000639659 CYP2A6P11509 494 aaPredicted RBP14.97□□□□□ -0.01
SYNE2-228ENST00000639659 CTPS1P17812 591 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 ERCC2P18074 760 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 HTR7P34969 479 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 CASRP41180 1078 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 GPR3P46089 330 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 GPR1P46091 355 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 RENBPP51606 427 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 LBRQ14739 615 aaKnown RBP14.97□□□□□ -0.01
SYNE2-228ENST00000639659 NR1D2Q14995 579 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 NCAPHQ15003 741 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 PTPRRQ15256 657 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 KRT31Q15323 416 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 CLPPQ16740 277 aaPredicted RBP14.97□□□□□ -0.01
SYNE2-228ENST00000639659 DEFB109BQ30KR1 87 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 TMCO4Q5TGY1 634 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 RFX8Q6ZV50 586 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 Q6ZVL8 140 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 C17orf82Q86X59 251 aaPredicted RBP14.97□□□□□ -0.01
SYNE2-228ENST00000639659 ARHGAP12Q8IWW6 846 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 TP53INP2Q8IXH6 220 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 NEK11Q8NG66 645 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 DTD2Q96FN9 168 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 NSMCE3Q96MG7 304 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 CATSPER2Q96P56 530 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 SLC38A3Q99624 504 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 SNRNP25Q9BV90 132 aaKnown RBP14.97□□□□□ -0.01
SYNE2-228ENST00000639659 TEX101Q9BY14 249 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 ASPSCR1Q9BZE9 553 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 KLHL3Q9UH77 587 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 ST14Q9Y5Y6 855 aa14.97□□□□□ -0.01
SYNE2-228ENST00000639659 A0A0U1RQS6 177 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.96□□□□□ -0.01
SYNE2-228ENST00000639659 MAP3K6O95382 1288 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 NTRK1P04629 796 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 GP1BBP13224 206 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 NOP2P46087 812 aaKnown RBP14.96□□□□□ -0.01
SYNE2-228ENST00000639659 RAB15P59190 212 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 FOXK1P85037 733 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 IL10RBQ08334 325 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 SLC10A7Q0GE19 358 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 CDC20Q12834 499 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 PEX6Q13608 980 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 RFTN1Q14699 578 aaPredicted RBP14.96□□□□□ -0.01
SYNE2-228ENST00000639659 ATP1A1-AS1Q5TC04 95 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 TSPAN33Q86UF1 283 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 NLGN4XQ8N0W4 816 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 NLGN4YQ8NFZ3 816 aaPredicted RBP14.96□□□□□ -0.01
SYNE2-228ENST00000639659 OR10G6Q8NH81 332 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 AGPAT1Q99943 283 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 TUBD1Q9UJT1 453 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 ANAPC2Q9UJX6 822 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 PLAAQ9Y263 795 aa14.96□□□□□ -0.01
SYNE2-228ENST00000639659 LOC101059948A0A1B0GTJ6 334 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms