RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 FBXW2Q9UKT8 454 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 LTN1O94822 1766 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 B4DGG1 531 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SLC37A4O43826 429 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 VAPBO95292 243 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SAGP10523 405 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 TCEA1P23193 301 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ACTR1BP42025 376 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 MAPK10P53779 464 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ARF5P84085 180 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PFKFB4Q16877 469 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 RELL1Q8IUW5 271 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 HORMAD2Q8N7B1 307 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 TPCN2Q8NHX9 752 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PMEPA1Q969W9 287 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 TRMT13Q9NUP7 481 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 FAM92AA1XBS5 289 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SNPHO15079 494 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 RRP8O43159 456 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 HGFP14210 728 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 MAT2AP31153 395 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CDC42P60953 191 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ECH1Q13011 328 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 FASTKQ14296 549 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 FAM151BQ6UXP7 276 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CHST15Q7LFX5 561 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 TRIM63Q969Q1 353 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 HSFY1Q96LI6 401 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CDHR5Q9HBB8 845 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 C2CD2Q9Y426 696 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ACOT7O00154 380 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 TCEA3O75764 348 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 UGT2B17O75795 530 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ADH5P11766 374 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CCNFP41002 786 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CDK7P50613 346 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 RTP1P59025 263 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 RPL6Q02878 288 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 HSF2Q03933 536 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 OLFML2AQ68BL7 652 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 BPIFA1Q9NP55 256 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 DNAAF2Q9NVR5 837 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PCDH10Q9P2E7 1040 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 WDR27A2RRH5 827 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 DDTLA6NHG4 134 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 IDH3BO43837 385 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PGM3O95394 542 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CHRNGP07510 517 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ZNF823P16415 610 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CHRNB4P30926 498 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SLC1A6P48664 564 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 KCNMA1Q12791 1236 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SPOCD1Q6ZMY3 1216 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 TMPRSS11BQ86T26 416 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 RANBP3LQ86VV4 465 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SLC26A11Q86WA9 606 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ITFG1Q8TB96 612 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ENKURQ8TC29 256 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 AP3S1Q92572 193 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 DLG3Q92796 817 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 AZIN2Q96A70 460 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ZDHHC12Q96GR4 267 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 AARSD1Q9BTE6 412 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 POMKQ9H5K3 350 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ANKHQ9HCJ1 492 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 MRPS30Q9NP92 439 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ESYT3A0FGR9 886 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TRUB2O95900 331 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 GP5P40197 560 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 MNDAP41218 407 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 RPS15P62841 145 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 DSG1Q02413 1049 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 DDI2Q5TDH0 399 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 C11orf63Q6NUN7 778 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ADGRG6Q86SQ4 1221 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PSTKQ8IV42 348 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TSEN15Q8WW01 171 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ZSWIM1Q9BR11 485 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 NIFKQ9BYG3 293 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TMEM138Q9NPI0 162 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 IL36AQ9UHA7 158 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 NRXN1Q9ULB1 1477 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TPST1O60507 370 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ADH1BP00325 375 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 CTPS1P17812 591 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PGDP52209 483 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ADRM1Q16186 407 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SLC9B1Q4ZJI4 515 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 RIPOR1Q6ZS17 1223 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 SYVN1Q86TM6 617 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 PLA2G15Q8NCC3 412 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 BRSK1Q8TDC3 778 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 MAGEB18Q96M61 343 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 ADAM33Q9BZ11 813 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 TBL1XR1Q9BZK7 514 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 UNKQ9C0B0 810 aaKnown RBP6.12□□□□□ -1.43
SCN1A-217ENST00000637988 BTBD1Q9H0C5 482 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 EQTNQ9NQ60 294 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 CNGB3Q9NQW8 809 aa6.12□□□□□ -1.43
SCN1A-217ENST00000637988 WASF3Q9UPY6 502 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms