RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 ECEL1O95672 775 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 DESP17661 470 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 LHCGRP22888 699 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 VIPR1P32241 457 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 CDK3Q00526 305 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 SRSF1Q07955 248 aaKnown RBP eCLIP16.41■□□□□ 0.22
CLN3-255ENST00000637100 ILF3Q12906 894 aaKnown RBP eCLIP16.41■□□□□ 0.22
CLN3-255ENST00000637100 CLCA4Q14CN2 919 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 ACOX1Q15067 660 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 PHF19Q5T6S3 580 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 HEATR4Q86WZ0 1026 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 TP53INP2Q8IXH6 220 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 PGBD5Q8N414 524 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 PTCD2Q8WV60 388 aaKnown RBP16.41■□□□□ 0.22
CLN3-255ENST00000637100 NUS1Q96E22 293 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 MGME1Q9BQP7 344 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 ARHGAP9Q9BRR9 750 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 DDA1Q9BW61 102 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 SLC25A18Q9H1K4 315 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 CARS2Q9HA77 564 aaKnown RBP16.41■□□□□ 0.22
CLN3-255ENST00000637100 SP110Q9HB58 689 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 AKAP7Q9P0M2 348 aaPredicted RBP16.41■□□□□ 0.22
CLN3-255ENST00000637100 TUBD1Q9UJT1 453 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 PHTF1Q9UMS5 762 aa16.41■□□□□ 0.22
CLN3-255ENST00000637100 IGHV1OR21-1A0A087WYE8 117 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 TEX33O43247 280 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 LRCH4O75427 683 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 SOD1P00441 154 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 CCDC172P0C7W6 258 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 GZMAP12544 262 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 PSMA2P25787 234 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 MIPP30301 263 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 FASLGP48023 281 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 CTBSQ01459 385 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 PEX6Q13608 980 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 MAP9Q49MG5 647 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 HSD11B1LQ7Z5J1 315 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 BMPERQ8N8U9 685 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 SUFUQ9UMX1 484 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 PCDHGC4Q9Y5F7 938 aa16.4■□□□□ 0.22
CLN3-255ENST00000637100 RHPN2P1A8MT19 583 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 A8MX80 341 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 B4E171 279 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 DFFAO00273 331 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 FZD6O60353 706 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 MAFKO60675 156 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 PPFIA2O75334 1257 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 THRAP10827 490 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 AK4P27144 223 aaPredicted RBP16.39■□□□□ 0.21
CLN3-255ENST00000637100 ALDH4A1P30038 563 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 UGT1A3P35503 534 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 PCK1P35558 622 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 ADCY8P40145 1251 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 ETV3P41162 512 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 TSPAN7P41732 249 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 CYP4F2P78329 520 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 UBXN1Q04323 297 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 NCAPHQ15003 741 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 DPYSL2Q16555 572 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 Q6ZVL8 140 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 RAVER1Q8IY67 606 aaKnown RBP16.39■□□□□ 0.21
CLN3-255ENST00000637100 AGBL5Q8NDL9 886 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 PATE1Q8WXA2 126 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 PMEPA1Q969W9 287 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 CCDC74BQ96LY2 380 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 TRIM7Q9C029 511 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 NOD2Q9HC29 1040 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 LMBRD1Q9NUN5 540 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 PCSK1NQ9UHG2 260 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 GTF3C3Q9Y5Q9 886 aa16.39■□□□□ 0.21
CLN3-255ENST00000637100 NPIPB15A6NHN6 443 aaPredicted RBP16.38■□□□□ 0.21
CLN3-255ENST00000637100 DAPK3O43293 454 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 RNF8O76064 485 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 CSF2RBP32927 897 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 GPLD1P80108 840 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 NFKB2Q00653 900 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 TRAF2Q12933 501 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 AMZ1Q400G9 498 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 TMEM71Q6P5X7 295 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 ADAMTSL4Q6UY14 1074 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 ZNF765Q7L2R6 523 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 POLNQ7Z5Q5 900 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 RCBTB1Q8NDN9 531 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 PIH1D2Q8WWB5 315 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 ASPSCR1Q9BZE9 553 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 SEPT11Q9NVA2 429 aaKnown RBP16.38■□□□□ 0.21
CLN3-255ENST00000637100 B3GALT1Q9Y5Z6 326 aa16.38■□□□□ 0.21
CLN3-255ENST00000637100 TTC24A2A3L6 582 aaPredicted RBP16.37■□□□□ 0.21
CLN3-255ENST00000637100 CLEC18AA5D8T8 446 aa16.37■□□□□ 0.21
CLN3-255ENST00000637100 CAPN5O15484 640 aaPredicted RBP16.37■□□□□ 0.21
CLN3-255ENST00000637100 PRPSAP2O60256 369 aa16.37■□□□□ 0.21
CLN3-255ENST00000637100 PGLSO95336 258 aa16.37■□□□□ 0.21
CLN3-255ENST00000637100 CPP00450 1065 aa16.37■□□□□ 0.21
CLN3-255ENST00000637100 CYP2A6P11509 494 aaPredicted RBP16.37■□□□□ 0.21
CLN3-255ENST00000637100 TNFAIP3P21580 790 aa16.37■□□□□ 0.21
CLN3-255ENST00000637100 NFKBIAP25963 317 aa16.37■□□□□ 0.21
CLN3-255ENST00000637100 PRKCIP41743 596 aa16.37■□□□□ 0.21
CLN3-255ENST00000637100 GNPDA1P46926 289 aa16.37■□□□□ 0.21
CLN3-255ENST00000637100 POLD2P49005 469 aa16.37■□□□□ 0.21
CLN3-255ENST00000637100 ATP1A2P50993 1020 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms