RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 MANEALQ5VSG8 457 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 PAPD7Q5XG87 772 aaKnown RBP14.5□□□□□ -0.09
CLN3-249ENST00000636685 CAMK1DQ8IU85 385 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 SLC37A2Q8TED4 501 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 STAMBPL1Q96FJ0 436 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 FRMD8Q9BZ67 464 aaPredicted RBP14.5□□□□□ -0.09
CLN3-249ENST00000636685 MAGEB5Q9BZ81 275 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 TMEM248Q9NWD8 314 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 PCDHGC3Q9UN70 934 aa14.5□□□□□ -0.09
CLN3-249ENST00000636685 FAM170AA1A519 330 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 ARGFXA6NJG6 315 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 A8MX80 341 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 FAM72CH0Y354 149 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 LRCH4O75427 683 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 KIAA0754O94854 1291 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 FLT3P36888 993 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 MAPK9P45984 424 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 FASLGP48023 281 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 ACOX1Q15067 660 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 CYTH1Q15438 398 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 CCDC40Q4G0X9 1142 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 RAB6CQ53S08 254 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 INO80DQ53TQ3 878 aaPredicted RBP14.49□□□□□ -0.09
CLN3-249ENST00000636685 FAM72AQ5TYM5 149 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 SLC6A19Q695T7 634 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 FAM72DQ6L9T8 149 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 TRNP1Q6NT89 227 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 GJB7Q6PEY0 223 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 BRAT1Q6PJG6 821 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 KRBA2Q6ZNG9 492 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 PHLDB2Q86SQ0 1253 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 FAM72BQ86X60 149 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 CT55Q8WUE5 264 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 CASKIN2Q8WXE0 1202 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 RANBP9Q96S59 729 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 RAB6CQ9H0N0 254 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 PHPT1Q9NRX4 125 aaPredicted RBP14.49□□□□□ -0.09
CLN3-249ENST00000636685 OR12D3Q9UGF7 316 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 NEU3Q9UQ49 428 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 PCDHGA6Q9Y5G7 932 aa14.49□□□□□ -0.09
CLN3-249ENST00000636685 MAP3K6O95382 1288 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 EML2O95834 649 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 RECKO95980 971 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 F13A1P00488 732 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 NFKBIAP25963 317 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 VARSP26640 1264 aaKnown RBP14.48□□□□□ -0.09
CLN3-249ENST00000636685 SNX16P57768 344 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 NFATC2Q13469 925 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 PEX6Q13608 980 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.48□□□□□ -0.09
CLN3-249ENST00000636685 FAM102AQ5T9C2 384 aaPredicted RBP14.48□□□□□ -0.09
CLN3-249ENST00000636685 AFMIDQ63HM1 303 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 SP5Q6BEB4 398 aaPredicted RBP14.48□□□□□ -0.09
CLN3-249ENST00000636685 BNIPLQ7Z465 357 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 XYLT1Q86Y38 959 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 DNAAF5Q86Y56 855 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 SNRNP40Q96DI7 357 aaKnown RBP14.48□□□□□ -0.09
CLN3-249ENST00000636685 ELMO2Q96JJ3 720 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 CFAP57Q96MR6 1250 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 ZNF641Q96N77 438 aaPredicted RBP14.48□□□□□ -0.09
CLN3-249ENST00000636685 RUFY1Q96T51 708 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 TEX101Q9BY14 249 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 ACTL8Q9H568 366 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 NOL6Q9H6R4 1146 aaKnown RBP14.48□□□□□ -0.09
CLN3-249ENST00000636685 PLCB1Q9NQ66 1216 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 ACSS2Q9NR19 701 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 ASF1BQ9NVP2 202 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 ITGB1BP2Q9UKP3 347 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 CFAP45Q9UL16 551 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 ZNF451Q9Y4E5 1061 aa14.48□□□□□ -0.09
CLN3-249ENST00000636685 ANKUB1A6NFN9 424 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 DPM1O60762 260 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 NDUFA10O95299 355 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 ZSCAN22P10073 491 aaPredicted RBP14.47□□□□□ -0.09
CLN3-249ENST00000636685 ERCC5P28715 1186 aaPredicted RBP14.47□□□□□ -0.09
CLN3-249ENST00000636685 LRRC63Q05C16 580 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 CHRNA6Q15825 494 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 DOK6Q6PKX4 331 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 ZDHHC17Q8IUH5 632 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 RASGRP3Q8IV61 690 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 RBMXL3Q8N7X1 1067 aaKnown RBP14.47□□□□□ -0.09
CLN3-249ENST00000636685 PNPLA2Q96AD5 504 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 POM121Q96HA1 1249 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 ING2Q9H160 280 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 LNPEPQ9UIQ6 1025 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 PADI1Q9ULC6 663 aa14.47□□□□□ -0.09
CLN3-249ENST00000636685 PKDREJQ9NTG1 2253 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 LRIG2O94898 1065 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 IVLP07476 585 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 CCNYL3P0C7X3 344 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 GARSP41250 739 aaKnown RBP14.46□□□□□ -0.09
CLN3-249ENST00000636685 RPS18P62269 152 aaKnown RBP14.46□□□□□ -0.09
CLN3-249ENST00000636685 SH3BP2P78314 561 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 CDK3Q00526 305 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 NRG1Q02297 640 aaPredicted RBP14.46□□□□□ -0.09
CLN3-249ENST00000636685 GRM3Q14832 879 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 UGT8Q16880 541 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 ZXDCQ2QGD7 858 aaPredicted RBP14.46□□□□□ -0.09
CLN3-249ENST00000636685 ATL3Q6DD88 541 aa14.46□□□□□ -0.09
CLN3-249ENST00000636685 DPPA4Q7L190 304 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms