RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TEX101Q9BY14 249 aa16.14■□□□□ 0.17
CLN3-246ENST00000636228 FRMD8Q9BZ67 464 aaPredicted RBP16.14■□□□□ 0.17
CLN3-246ENST00000636228 PHPT1Q9NRX4 125 aaPredicted RBP16.14■□□□□ 0.17
CLN3-246ENST00000636228 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.14■□□□□ 0.17
CLN3-246ENST00000636228 TAAR2Q9P1P5 351 aa16.14■□□□□ 0.17
CLN3-246ENST00000636228 CD84Q9UIB8 345 aa16.14■□□□□ 0.17
CLN3-246ENST00000636228 ACSL6Q9UKU0 697 aa16.14■□□□□ 0.17
CLN3-246ENST00000636228 SCINQ9Y6U3 715 aa16.14■□□□□ 0.17
CLN3-246ENST00000636228 LRRK1Q38SD2 2015 aa16.14■□□□□ 0.17
CLN3-246ENST00000636228 SLC28A2O43868 658 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 SOCS5O75159 536 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 RARAP10276 462 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 WT1P19544 449 aaPredicted RBP16.13■□□□□ 0.17
CLN3-246ENST00000636228 MPSTP25325 297 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 PCK1P35558 622 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 PRKCIP41743 596 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 CYP4F2P78329 520 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 CDK3Q00526 305 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 CTBSQ01459 385 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 DPYSL2Q16555 572 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 TSR1Q2NL82 804 aaKnown RBP16.13■□□□□ 0.17
CLN3-246ENST00000636228 MANEAQ5SRI9 462 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 NKAIN2Q5VXU1 208 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 PIM3Q86V86 326 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 SGF29Q96ES7 293 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 MGME1Q9BQP7 344 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 GSDMCQ9BYG8 508 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 NT5MQ9NPB1 228 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 TMEM63CQ9P1W3 806 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 PHTF1Q9UMS5 762 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 TMEM98Q9Y2Y6 226 aa16.13■□□□□ 0.17
CLN3-246ENST00000636228 LRP4O75096 1905 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 TRBV23OR9-2A0A075B6M9 112 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 CPNE6O95741 557 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 PDHA1P08559 390 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 CYP2A6P11509 494 aaPredicted RBP16.12■□□□□ 0.17
CLN3-246ENST00000636228 CD1CP29017 333 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 ZNF135P52742 658 aaPredicted RBP16.12■□□□□ 0.17
CLN3-246ENST00000636228 ILF3Q12906 894 aaKnown RBP eCLIP16.12■□□□□ 0.17
CLN3-246ENST00000636228 NFATC3Q12968 1075 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 BOLA3Q53S33 107 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 MARC1Q5VT66 337 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 TRIM74Q86UV6 250 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 C17orf82Q86X59 251 aaPredicted RBP16.12■□□□□ 0.17
CLN3-246ENST00000636228 ATPAF2Q8N5M1 289 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 PMEPA1Q969W9 287 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 SCRN2Q96FV2 425 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 ISCUQ9H1K1 167 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 PCDH18Q9HCL0 1135 aa16.12■□□□□ 0.17
CLN3-246ENST00000636228 MRPL47Q9HD33 250 aaKnown RBP16.12■□□□□ 0.17
CLN3-246ENST00000636228 SETXQ7Z333 2677 aaKnown RBP16.12■□□□□ 0.17
CLN3-246ENST00000636228 A0A1W2PQ67 120 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 PPM1DO15297 605 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 PGLSO95336 258 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 HSPA9P38646 679 aaKnown RBP16.11■□□□□ 0.17
CLN3-246ENST00000636228 ANP32AP39687 249 aaKnown RBP16.11■□□□□ 0.17
CLN3-246ENST00000636228 ADCY8P40145 1251 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 MMP13P45452 471 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 NFKB2Q00653 900 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 ITKQ08881 620 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 MMRN1Q13201 1228 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 BIRC2Q13490 618 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 FILIP1LQ4L180 1135 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 ARMC12Q5T9G4 340 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 MARK2Q7KZI7 788 aaKnown RBP16.11■□□□□ 0.17
CLN3-246ENST00000636228 PRICKLE2Q7Z3G6 844 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 TECPR1Q7Z6L1 1165 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 NAGSQ8N159 534 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 BBS5Q8N3I7 341 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 LRRN4Q8WUT4 740 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 NSMCE1Q8WV22 266 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 PIH1D2Q8WWB5 315 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 SPOCK2Q92563 424 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 SCAMP4Q969E2 229 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 TMEM159Q96B96 161 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 AGAP2Q99490 1192 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 ARHGAP9Q9BRR9 750 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 NAT10Q9H0A0 1025 aaKnown RBP16.11■□□□□ 0.17
CLN3-246ENST00000636228 ABCG8Q9H221 673 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 TRNAU1APQ9NX07 287 aaKnown RBP16.11■□□□□ 0.17
CLN3-246ENST00000636228 SEPT10Q9P0V9 454 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 ANKRD36A6QL64 1941 aa16.11■□□□□ 0.17
CLN3-246ENST00000636228 TENM4Q6N022 2769 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 IGHV5-10-1A0A0J9YXX1 117 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 SMTNL1A8MU46 457 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 GOLGA6L22H0YM25 854 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 SOD1P00441 154 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 CD48P09326 243 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 FAM87AP0C7U9 286 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 MYBL1P10243 752 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 ACTR1BP42025 376 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 SSR1P43307 286 aaKnown RBP16.1■□□□□ 0.17
CLN3-246ENST00000636228 GPR1P46091 355 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 ACTR1AP61163 376 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 IHHQ14623 411 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 USP45Q70EL2 814 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 ZNF438Q7Z4V0 828 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 ZNF761Q86XN6 746 aaPredicted RBP16.1■□□□□ 0.17
CLN3-246ENST00000636228 DTX1Q86Y01 620 aa16.1■□□□□ 0.17
CLN3-246ENST00000636228 TRIM11Q96F44 468 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms