RNA–Protein interactions for RNA: ENST00000635997.1

NEDD4L-238, Transcript of neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, human

TSL 5 BASIC

Gene NEDD4L, Length 4,402 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEDD4L-238	ENST00000635997	LINC01553	A4QN01	128 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	TRIM43B	A6NCK2	446 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	ATP5F1	P24539	256 aa	Predicted RBP	14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	PBX2	P40425	430 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	WNT7B	P56706	349 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	PITX1	P78337	314 aa	Predicted RBP	14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	ALDH6A1	Q02252	535 aa	Known RBP	14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	AFTPH	Q6ULP2	937 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	NAPRT	Q6XQN6	538 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	DENND6A	Q8IWF6	608 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	NKAP	Q8N5F7	415 aa	Known RBP	14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	GLIS1	Q8NBF1	620 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	TRIM43	Q96BQ3	446 aa	Predicted RBP	14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	MYLK2	Q9H1R3	596 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	EFR3B	Q9Y2G0	817 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	WNT6	Q9Y6F9	365 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SPTA1	P02549	2419 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	GSTM1	P09488	218 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	CNP	P09543	421 aa	Known RBP	14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	CREB5	Q02930	508 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SULT2A1	Q06520	285 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	OLIG2	Q13516	323 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	FBXL22	Q6P050	247 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	FAM210A	Q96ND0	272 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	EXOSC4	Q9NPD3	245 aa	Known RBP	14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SLC12A4	Q9UP95	1085 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	COL18A1	P39060	1754 aa		14.32	□□□□□ -0.12
NEDD4L-238	ENST00000635997	HNRNPCL2	B2RXH8	293 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	RASSF9	O75901	435 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	NDST3	O95803	873 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	OCM2	P0CE71	109 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	OCM	P0CE72	109 aa	Predicted RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	PSMA4	P25789	261 aa	Known RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	PSMD8	P48556	350 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	CDK7	P50613	346 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	NCALD	P61601	193 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	LHX8	Q68G74	356 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	OR10G6	Q8NH81	332 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SPPL2A	Q8TCT8	520 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	CRTAC1	Q9NQ79	661 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	MIOS	Q9NXC5	875 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	ISM1	B1AKI9	464 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	PRMT5	O14744	637 aa	Predicted RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	AHCYL1	O43865	530 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SNAP91	O60641	907 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	NBN	O60934	754 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	ZNF623	O75123	536 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	ALPPL2	P10696	532 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	ROR2	Q01974	943 aa	Known RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	DLG2	Q15700	870 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	TMEM110	Q86TL2	294 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	CAMK1D	Q8IU85	385 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	CMTM8	Q8IZV2	173 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SIX5	Q8N196	739 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	RTL3	Q8N8U3	475 aa	Known RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	FUBP3	Q96I24	572 aa	Known RBP eCLIP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	RMND5A	Q9H871	391 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	PRDM16	Q9HAZ2	1276 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	PIAS3	Q9Y6X2	628 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	C5orf60	A6NFR6	353 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SNX3	O60493	162 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	TMEM63A	O94886	807 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	NUDT17	P0C025	328 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	NMBR	P28336	390 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	TRIP4	Q15650	581 aa	Predicted RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	FAM187B	Q17R55	369 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	PARP15	Q460N3	678 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	FAM45BP	Q6NSW5	357 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	FAM45A	Q8TCE6	357 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	IRGQ	Q8WZA9	623 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SLC4A5	Q9BY07	1137 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	ATG10	Q9H0Y0	220 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	WDR55	Q9H6Y2	383 aa	Predicted RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	MRGBP	Q9NV56	204 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	CNTN3	Q9P232	1028 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SLC17A6	Q9P2U8	582 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	CORO1C	Q9ULV4	474 aa	Predicted RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	ITGB4	P16144	1822 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	RIF1	Q5UIP0	2472 aa	Known RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	C2orf71	A6NGG8	1288 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SMNDC1	O75940	238 aa	Known RBP eCLIP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	HPGD	P15428	266 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	PTPN4	P29074	926 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	RPS6KA3	P51812	740 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SLC25A3	Q00325	362 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	VAC14	Q08AM6	782 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SLC10A7	Q0GE19	358 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	TRAF2	Q12933	501 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	EIF2B5	Q13144	721 aa	Known RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	ZNF460	Q14592	562 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SUZ12	Q15022	739 aa	Known RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SYT12	Q8IV01	421 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	P3H2	Q8IVL5	708 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	UNC5B	Q8IZJ1	945 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	EIF1AD	Q8N9N8	165 aa	Known RBP	14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	ZNF555	Q8NEP9	628 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	SLC35F5	Q8WV83	523 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	FEM1C	Q96JP0	617 aa		14.31	□□□□□ -0.12
NEDD4L-238	ENST00000635997	GPR62	Q9BZJ7	368 aa		14.31	□□□□□ -0.12

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms