RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GOLGA6BA6NDN3 693 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 NEMP2A6NFY4 417 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 KIF5CO60282 957 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 SDC3O75056 442 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 CBFA2T3O75081 653 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 PIAS2O75928 621 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 PYGLP06737 847 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 GOLGA6DP0CG33 693 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 JUNDP17535 347 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 DGKAP23743 735 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 BLKP51451 505 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 PPARDQ03181 441 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 CDKN3Q16667 212 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 HS1BP3Q53T59 392 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 ZNF569Q5MCW4 686 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 FAXCQ5TGI0 409 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 ENPP7Q6UWV6 458 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 ARHGEF18Q6ZSZ5 1173 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 ZNF765Q7L2R6 523 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 LRRC45Q96CN5 670 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 AP2M1Q96CW1 435 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 MRGPRX2Q96LB1 330 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 WDR92Q96MX6 357 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 TMEM121Q9BTD3 319 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 SLC13A1Q9BZW2 595 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 PHPT1Q9NRX4 125 aaPredicted RBP20.68■□□□□ 0.9
CLN3-240ENST00000631023 GOLGA6AQ9NYA3 693 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 BTBD3Q9Y2F9 522 aa20.68■□□□□ 0.9
CLN3-240ENST00000631023 RGSL1A5PLK6 1076 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 CEP104O60308 925 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 C1SP09871 688 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 HLA-DPA1P20036 260 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 TEAD1P28347 426 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 KIAA1024LP59773 190 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 SIM1P81133 766 aaPredicted RBP20.67■□□□□ 0.9
CLN3-240ENST00000631023 EIF2B5Q13144 721 aaKnown RBP20.67■□□□□ 0.9
CLN3-240ENST00000631023 RAET1GQ6H3X3 334 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 ATG4AQ8WYN0 398 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 FUBP1Q96AE4 644 aaKnown RBP20.67■□□□□ 0.9
CLN3-240ENST00000631023 GPR63Q9BZJ6 419 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 ABCG8Q9H221 673 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 CD84Q9UIB8 345 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 ZKSCAN5Q9Y2L8 839 aa20.67■□□□□ 0.9
CLN3-240ENST00000631023 K7ESM1 405 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 ENC1O14682 589 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 LIASO43766 372 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 GCATO75600 419 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 FGGP02679 453 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 PSMB4P28070 264 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 GPR1P46091 355 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 SPINT3P49223 89 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 FOXK2Q01167 660 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 SLC1A5Q15758 541 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 SIRPB2Q5JXA9 342 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 KANSL1Q7Z3B3 1105 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 LYSMD3Q7Z3D4 306 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 GLRX5Q86SX6 157 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 PHACTR4Q8IZ21 702 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 SLC25A45Q8N413 288 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 EID2Q8N6I1 236 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 BAHD1Q8TBE0 780 aaPredicted RBP20.66■□□□□ 0.9
CLN3-240ENST00000631023 C1orf54Q8WWF1 131 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 TEX101Q9BY14 249 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 TRABDQ9H4I3 376 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 RAD18Q9NS91 495 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 SPASTQ9UBP0 616 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 SHOC2Q9UQ13 582 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 ZNF148Q9UQR1 794 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 ZNF711Q9Y462 761 aa20.66■□□□□ 0.9
CLN3-240ENST00000631023 ARHGEF17Q96PE2 2063 aaPredicted RBP20.65■□□□□ 0.9
CLN3-240ENST00000631023 RASGRP1O95267 797 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 FGF1P05230 155 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 PIRTP0C851 137 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 MYCLP1P12525 358 aaPredicted RBP20.65■□□□□ 0.9
CLN3-240ENST00000631023 CXCR5P32302 372 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 ACTN2P35609 894 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 CCNG2Q16589 344 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 PARP6Q2NL67 630 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 P3H1Q32P28 736 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 RFLNAQ6ZTI6 216 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 SLC25A41Q8N5S1 370 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 PBKQ96KB5 322 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 CDH19Q9H159 772 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 FAM83DQ9H4H8 585 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 HACD3Q9P035 362 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 KLQ9UEF7 1012 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 FTSJ1Q9UET6 329 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 APOBEC3BQ9UH17 382 aaKnown RBP20.65■□□□□ 0.9
CLN3-240ENST00000631023 KLF15Q9UIH9 416 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 CSNK1G3Q9Y6M4 447 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 SCN8AQ9UQD0 1980 aa20.65■□□□□ 0.9
CLN3-240ENST00000631023 SPAARA0A1B0GVQ0 90 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 TNFRSF10CO14798 259 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 TNFSF14O43557 240 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 ATXN1LP0C7T5 689 aaKnown RBP20.64■□□□□ 0.9
CLN3-240ENST00000631023 ALPPL2P10696 532 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 SRP54P61011 504 aaKnown RBP20.64■□□□□ 0.9
CLN3-240ENST00000631023 OASLQ15646 514 aaKnown RBP20.64■□□□□ 0.9
CLN3-240ENST00000631023 LONRF2Q1L5Z9 754 aa20.64■□□□□ 0.9
CLN3-240ENST00000631023 N4BP2L1Q5TBK1 243 aaPredicted RBP20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms