RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 A0A0U1RQS6 177 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 LOC285095A0A1B0GVY8 99 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 A0A1W2PR77 199 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 TLR4O00206 839 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 CLDN7O95471 211 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 METTL18O95568 372 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 EPOP01588 193 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 WNT1P04628 370 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 FGF1P05230 155 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 ZNF883P0CG24 379 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 ETS1P14921 441 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 IGFALSP35858 605 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 CHRNA4P43681 627 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 RABIFP47224 123 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 OVGP1Q12889 678 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 SUZ12Q15022 739 aaKnown RBP18.08■□□□□ 0.48
CLN3-239ENST00000628023 KIF19Q2TAC6 998 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 SIRPB2Q5JXA9 342 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 KYAT3Q6YP21 454 aaKnown RBP18.08■□□□□ 0.48
CLN3-239ENST00000628023 HSD11B1LQ7Z5J1 315 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 PRUNE1Q86TP1 453 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 IQCHQ86VS3 1027 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 TP53I13Q8NBR0 393 aaPredicted RBP18.08■□□□□ 0.48
CLN3-239ENST00000628023 FAM174AQ8TBP5 190 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 C16orf45Q96MC5 204 aaPredicted RBP18.08■□□□□ 0.48
CLN3-239ENST00000628023 CAMK1GQ96NX5 476 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 LYSMD1Q96S90 227 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 KLF6Q99612 283 aaPredicted RBP18.08■□□□□ 0.48
CLN3-239ENST00000628023 TBL1YQ9BQ87 522 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 APOL2Q9BQE5 337 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 TMEM121BQ9BXQ6 578 aaPredicted RBP18.08■□□□□ 0.48
CLN3-239ENST00000628023 GPR63Q9BZJ6 419 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 LRRC40Q9H9A6 602 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 GDF3Q9NR23 364 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 SHOC2Q9UQ13 582 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 ZNF711Q9Y462 761 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 SNX11Q9Y5W9 270 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 IGF2RP11717 2491 aa18.08■□□□□ 0.48
CLN3-239ENST00000628023 POM121BA6NF01 834 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 PSMD3O43242 534 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 PHF2O75151 1096 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 AGTP01019 485 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 C1SP09871 688 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 ATXN1LP0C7T5 689 aaKnown RBP18.07■□□□□ 0.48
CLN3-239ENST00000628023 FDFT1P37268 417 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 ETV3P41162 512 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 PAFAH1B1P43034 410 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 WSCD2Q2TBF2 565 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 Q6ZSR6 202 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 LYSMD3Q7Z3D4 306 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 ABI3BPQ7Z7G0 1075 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 OR13H1Q8NG92 308 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 ZCCHC14Q8WYQ9 949 aaKnown RBP18.07■□□□□ 0.48
CLN3-239ENST00000628023 CENPTQ96BT3 561 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 DTD2Q96FN9 168 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 COQ10AQ96MF6 247 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 SRPK1Q96SB4 655 aaKnown RBP18.07■□□□□ 0.48
CLN3-239ENST00000628023 ZFYVE1Q9HBF4 777 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 MAGEE1Q9HCI5 957 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 MBNL1Q9NR56 388 aaKnown RBP18.07■□□□□ 0.48
CLN3-239ENST00000628023 RAB6BQ9NRW1 208 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 TM7SF3Q9NS93 570 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 KCTD5Q9NXV2 234 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 PKD2L2Q9NZM6 624 aa18.07■□□□□ 0.48
CLN3-239ENST00000628023 LRRK1Q38SD2 2015 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 USP12O75317 370 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 ZSCAN5DPP0CG00 497 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 COILP38432 576 aaPredicted RBP18.06■□□□□ 0.48
CLN3-239ENST00000628023 CTSKP43235 329 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 STC1P52823 247 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 THOP1P52888 689 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 NXPH1P58417 271 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 PTSQ03393 145 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 OLIG2Q13516 323 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 SPARCL1Q14515 664 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 AGERQ15109 404 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 CYP1B1Q16678 543 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 HLA-BQ31612 363 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 CCDC137Q6PK04 289 aaKnown RBP18.06■□□□□ 0.48
CLN3-239ENST00000628023 Q6ZVL8 140 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 GLT6D1Q7Z4J2 308 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 RAB44Q7Z6P3 723 aaPredicted RBP18.06■□□□□ 0.48
CLN3-239ENST00000628023 PDCD7Q8N8D1 485 aaKnown RBP18.06■□□□□ 0.48
CLN3-239ENST00000628023 ATL2Q8NHH9 583 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 BLOC1S5Q8TDH9 187 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 BMFQ96LC9 184 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 CD84Q9UIB8 345 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 PCDHGB2Q9Y5G2 931 aa18.06■□□□□ 0.48
CLN3-239ENST00000628023 FAM221BA6H8Z2 402 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 FANCGO15287 622 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 AP2A1O95782 977 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 FTH1P19P0C7X4 201 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 GM2AP17900 193 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 FNTAP49354 379 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 BASP1P80723 227 aaKnown RBP18.05■□□□□ 0.48
CLN3-239ENST00000628023 BNC1Q01954 994 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 MTM1Q13496 603 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 RAET1GQ6H3X3 334 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 TTC27Q6P3X3 843 aa18.05■□□□□ 0.48
CLN3-239ENST00000628023 C4orf22Q6V702 233 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms