RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SLC22A16Q86VW1 577 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 DCP2Q8IU60 420 aaKnown RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 C8orf59Q8N0T1 100 aaPredicted RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 TTC39CQ8N584 583 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 OR7A2PQ8NGA2 310 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 FAM110BQ8TC76 370 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 MUL1Q969V5 352 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 HDAC11Q96DB2 347 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 MFSD3Q96ES6 412 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 P2RY11Q96G91 374 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 HEXIM2Q96MH2 286 aaKnown RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 MUS81Q96NY9 551 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 MRPL57Q9BQC6 102 aaKnown RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 OSBPL10Q9BXB5 764 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 CEP44Q9C0F1 390 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 FAM124BQ9H5Z6 455 aaPredicted RBP10.83□□□□□ -0.68
UPF3A-212ENST00000619079 NECTIN3Q9NQS3 549 aa10.83□□□□□ -0.68
UPF3A-212ENST00000619079 EIF3FO00303 357 aaPredicted RBP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 AURKAO14965 403 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 KMOO15229 486 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 DYRK3O43781 588 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 KRT19P08727 400 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 KCNA2P16389 499 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 HDCP19113 662 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ELK4P28324 431 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 AXLP30530 894 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 OXTRP30559 389 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 SLC6A3Q01959 620 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 GALNT1Q10472 559 aaPredicted RBP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 GRM3Q14832 879 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 POLD3Q15054 466 aaPredicted RBP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 LCLAT1Q6UWP7 414 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 DSG4Q86SJ6 1040 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ZBTB33Q86T24 672 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ZC3HC1Q86WB0 502 aaKnown RBP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ZDHHC17Q8IUH5 632 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 DNAAF3Q8N9W5 541 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 OR52K1Q8NGK4 314 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 UBA3Q8TBC4 463 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ZFP90Q8TF47 636 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 LGMNQ99538 433 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 SLC39A3Q9BRY0 314 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ADNPQ9H2P0 1102 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 SPC25Q9HBM1 224 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 SAGE2PA6NJ88 616 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 AP3B1O00203 1094 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 SNPHO15079 494 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ANGPT2O15123 496 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 GABARAPO95166 117 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 AP2A1O95782 977 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 NR4A1P22736 598 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 CD40LGP29965 261 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 NPY2RP49146 381 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ALDH3A2P51648 485 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ORC1Q13415 861 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 E2F2Q14209 437 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 CTF1Q16619 201 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 COQ5Q5HYK3 327 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 PITRM1Q5JRX3 1037 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 TTC23Q5W5X9 447 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ABHD15Q6UXT9 468 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 R3HCC1LQ7Z5L2 792 aaKnown RBP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ADCK1Q86TW2 530 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 PSTKQ8IV42 348 aaKnown RBP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 CENPLQ8N0S6 344 aaPredicted RBP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 OR6Q1Q8NGQ2 317 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 PHF10Q8WUB8 498 aaKnown RBP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 CHAC2Q8WUX2 184 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 PIWIL1Q96J94 861 aaKnown RBP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 UBXN10Q96LJ8 280 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 TWNKQ96RR1 684 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 OR2B2Q9GZK3 357 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 ABHD16BQ9H3Z7 469 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 POMKQ9H5K3 350 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 IARS2Q9NSE4 1012 aaKnown RBP10.82□□□□□ -0.68
UPF3A-212ENST00000619079 EGFL7Q9UHF1 273 aa10.82□□□□□ -0.68
UPF3A-212ENST00000619079 INPP4BO15327 924 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 RFPL2O75678 378 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 SNAI1O95863 264 aaPredicted RBP10.81□□□□□ -0.68
UPF3A-212ENST00000619079 HPRP00739 348 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 EDN1P05305 212 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 HTR1BP28222 390 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 ABCG1P45844 678 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 PPP5CP53041 499 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 CDH8P55286 799 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 RAB10P61026 200 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 PHC1P78364 1004 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 CACNB2Q08289 660 aaPredicted RBP10.81□□□□□ -0.68
UPF3A-212ENST00000619079 LAMC2Q13753 1193 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 HIST2H2ACQ16777 129 aaPredicted RBP10.81□□□□□ -0.68
UPF3A-212ENST00000619079 LRIT3Q3SXY7 679 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 CNSTQ6PJW8 725 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 TAS2R42Q7RTR8 314 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 PIWIL3Q7Z3Z3 882 aaKnown RBP10.81□□□□□ -0.68
UPF3A-212ENST00000619079 VSIG10LQ86VR7 867 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 GALNT13Q8IUC8 556 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 BHMTQ93088 406 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 VPS33AQ96AX1 596 aa10.81□□□□□ -0.68
UPF3A-212ENST00000619079 TRIM54Q9BYV2 358 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms